View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15684_high_4 (Length: 390)

Name: NF15684_high_4
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15684_high_4
NF15684_high_4
[»] chr4 (6 HSPs)
chr4 (13-373)||(53591706-53592066)
chr4 (153-206)||(12583233-12583286)
chr4 (153-206)||(45892681-45892734)
chr4 (153-206)||(48665920-48665973)
chr4 (159-206)||(21801430-21801477)
chr4 (148-206)||(9733980-9734037)
[»] chr3 (3 HSPs)
chr3 (50-373)||(23779794-23780117)
chr3 (46-369)||(4858308-4858627)
chr3 (153-195)||(5999913-5999955)
[»] chr5 (5 HSPs)
chr5 (46-368)||(1953927-1954246)
chr5 (120-232)||(35247442-35247556)
chr5 (154-203)||(32538039-32538088)
chr5 (150-203)||(15195762-15195815)
chr5 (150-202)||(32653623-32653675)
[»] chr1 (3 HSPs)
chr1 (29-366)||(27308856-27309190)
chr1 (150-193)||(25078738-25078781)
chr1 (153-202)||(50590189-50590238)
[»] chr2 (7 HSPs)
chr2 (153-276)||(13135740-13135862)
chr2 (13-77)||(13135599-13135663)
chr2 (160-203)||(31266907-31266950)
chr2 (153-205)||(42236700-42236752)
chr2 (148-182)||(26063131-26063165)
chr2 (148-181)||(26068870-26068903)
chr2 (148-197)||(29829773-29829822)
[»] chr6 (3 HSPs)
chr6 (153-206)||(23661390-23661443)
chr6 (122-231)||(20490025-20490136)
chr6 (153-205)||(1445762-1445814)
[»] scaffold0002 (1 HSPs)
scaffold0002 (120-228)||(346996-347106)
[»] chr7 (4 HSPs)
chr7 (120-226)||(32864655-32864763)
chr7 (153-206)||(12119997-12120050)
chr7 (156-206)||(26470343-26470393)
chr7 (156-206)||(26546783-26546833)
[»] scaffold0527 (2 HSPs)
scaffold0527 (153-206)||(3321-3374)
scaffold0527 (153-206)||(11384-11437)
[»] chr8 (1 HSPs)
chr8 (152-197)||(10261336-10261381)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 373
Target Start/End: Original strand, 53591706 - 53592066
Alignment:
Q  13 gagcacagagtcacaaaggtcttgaaaattcaatcgtagttcagatcgagggatgaacgaacgacatgaatgtaaagcagtccactgatgacgcataaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| ||| |||||||    
T  53591706 gagcacagagtcacaaaggtcttgaaaattcaatcgtagttcagatcgagggacgaacaaacgacatgaatgtaaagcagtccattgacgacacataaag 53591805  T
Q  113 cgatcgtagcagataaagttctgaaggtacgacatcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaaca 212  Q
    | | ||||| ||||||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||    
T  53591806 caaccgtagtagataaagtcctgaaggtacgacatcaataactatcgtcaacacggagcgtctacgcacctagccctttcgagcaacatcaggcgaaaca 53591905  T
Q  213 agtctcgttgaatccagatcgagggatggtatccaaccgaacatcgcacaaatgaacagaaccatataaccaaatcttaaatccggacaaaccagattca 312  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||    
T  53591906 agtctcgttgaatccagatcgagtgatggtatccaaccaaacatcgcacaaatgaatagaaccagataaccaaatcttaaatccgaacaaaccatattca 53592005  T
Q  313 aaatttcaaccaaactagagagtcggaacaaaaccaccatcaatcttcatcttcccggaac 373  Q
    ||| ||||||||||| ||||||||||||||||||||||  |||||||||||||| ||||||    
T  53592006 aaaattcaaccaaaccagagagtcggaacaaaaccaccgccaatcttcatcttctcggaac 53592066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 12583233 - 12583286
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 206  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||    
T  12583233 actaccgtcaacacggagcatctacacacctagccctttcgagcaacattagga 12583286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 45892681 - 45892734
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 206  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  45892681 actaccgtcaacacggagcatctaggcacctagcccttttgagcaacatcagga 45892734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 48665973 - 48665920
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 206  Q
    ||||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  48665973 actaccgtcaacacggagcatctacgcacctagctcttttgagcaacatcagga 48665920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 159 - 206
Target Start/End: Complemental strand, 21801477 - 21801430
Alignment:
Q  159 gtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 206  Q
    ||||||||||||||||||||||||| || | |||||||||||||||||    
T  21801477 gtcaacacggagcatctacgcacctagctcattcgagcaacatcagga 21801430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 9734037 - 9733980
Alignment:
Q  148 caacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 206  Q
    ||||| |||||||||||||||||| |||||||||||  ||||||||||| |||||||||    
T  9734037 caacagctaccgtcaacacggagcgtctacgcacctaaccctttcgagc-acatcagga 9733980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 50 - 373
Target Start/End: Complemental strand, 23780117 - 23779794
Alignment:
Q  50 agttcagatcgagggatgaacgaacgacatgaatgtaaagcagtccactgatgacgcataaagcgatcgtagcagataaagttctgaaggtacgacatca 149  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||  ||||||||||||||||    
T  23780117 agttcagatcgagggatgaacaaacgacatgaatgtaaagcagtccactgacgacgcataaagcaaccgtagcagataaagtcatgaaggtacgacatca 23780018  T
Q  150 acaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaacaagtctcgttgaatc-cagatcgagggatggtatccaa 248  Q
    |||||||||||||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||| ||||||||  |||||||||||||||||| ||    
T  23780017 acaactaccgtcaacacggagcgtctacgcacctaaccctttcgagcaacatcaggcgaaacaagtcttgttgaatcttagatcgagggatggtatctaa 23779918  T
Q  249 ccgaacatcgcacaaatgaacagaaccatataaccaaatctt-aaatccggacaaaccagattcaaaatttcaaccaaactagagagtcggaacaaaacc 347  Q
    || |||||| |||||||||||||||||  | ||||||||||| ||||||||||||| |||| |||||| ||||||||||| ||||  |||||||  ||||    
T  23779917 ccaaacatctcacaaatgaacagaacc--agaaccaaatcttaaaatccggacaaatcagactcaaaaattcaaccaaaccagaggttcggaacggaacc 23779820  T
Q  348 accatcaatcttcatcttcccggaac 373  Q
    |||| |||||||||||||||||||||    
T  23779819 accaccaatcttcatcttcccggaac 23779794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 46 - 369
Target Start/End: Original strand, 4858308 - 4858627
Alignment:
Q  46 tcgtagttcagatcgagggatgaacgaacgacatgaatgtaaagcagtccactgatgacgcataaagcgatcgtagcagataaagttctgaaggtacgac 145  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||  ||||||||||| | ||||||||||||||| ||| |||||||||    
T  4858308 tcgtagttcagttcgagggatgaacaaacgacataaatgtaaagcagtccactgacaacgcataaagcaaccgtagcagataaagtcctgcaggtacgac 4858407  T
Q  146 atcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaacaagtctcgttgaatccagatcgagggatggtatc 245  Q
    ||||||||||| ||||||| | |||| ||||||||| | ||||||||| || | |||||| ||||||||||| |||||||||||||||||||||||||||    
T  4858408 atcaacaactatcgtcaac-cagagcgtctacgcacttagccctttcgtgc-atatcaggcgaaacaagtcttgttgaatccagatcgagggatggtatc 4858505  T
Q  246 caaccgaacatcgcacaaatgaacagaaccatataaccaaatcttaaatccggacaaaccagattcaaaatttcaaccaaactagagagtcggaacaaaa 345  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||| ||||||||||||||| ||||  || || | ||| || |    
T  4858506 caaccaaacatcgcacaaatgaacagaacc--ataaccaaatcttaaatccagacaaaccaaattcaaaatttcaactaaaccggatagccagaataaga 4858603  T
Q  346 ccaccatcaatcttcatcttcccg 369  Q
    |||||| |||||||||||||||||    
T  4858604 ccaccaccaatcttcatcttcccg 4858627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 195
Target Start/End: Original strand, 5999913 - 5999955
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgag 195  Q
    |||||||||||||| |||||||||||||||| |||||||||||    
T  5999913 actaccgtcaacacagagcatctacgcacctagccctttcgag 5999955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 46 - 368
Target Start/End: Complemental strand, 1954246 - 1953927
Alignment:
Q  46 tcgtagttcagatcgagggatgaacgaacgacatgaatgtaaagcagtccactgatgacgcataaagcgatcgtagcagataaagttctgaaggtacgac 145  Q
    |||||||| |||||||||||||||| |||||||  |||||||||||||||||||| |||||||||||| | ||||||||||||| |  |||||||||| |    
T  1954246 tcgtagtttagatcgagggatgaacaaacgacagaaatgtaaagcagtccactgacgacgcataaagcaaccgtagcagataaattcatgaaggtacggc 1954147  T
Q  146 atcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaacaagtctcgttgaatccagatcgagggatggtatc 245  Q
    ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||    
T  1954146 atcaacaactaccgtcaacacagagcgtctacgcacctagccctttcgagcaacattaggagaaacaagtcttgttgaatgcagatcgagggatggtatc 1954047  T
Q  246 caaccgaacatcgcacaaatgaacagaaccatataaccaaatcttaaatccggacaaaccagattcaaaatttcaaccaaactagagagtcggaacaaaa 345  Q
    ||||| ||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||| ||| |||| ||| || | |||||| |    
T  1954046 caacc-aacatcgcacaaatgaacagaacc--agaaccaaatcttaaatccggacaaaccagattcaaaatttaaactaaaccagatagcctgaacaaga 1953950  T
Q  346 ccaccatcaatcttcatcttccc 368  Q
    ||||||  |||||||||||||||    
T  1953949 ccaccactaatcttcatcttccc 1953927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 120 - 232
Target Start/End: Complemental strand, 35247556 - 35247442
Alignment:
Q  120 agcagataaagttctgaaggtacgac-atcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaa-acaagtct 217  Q
    |||||||| |||||| |||||||||| | | |||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||| | ||| ||    
T  35247556 agcagatatagttcttaaggtacgacgaacgacaactaccgtcaacacggagcatctacgcacctagctctttcgagcaacctcaggagaacataagact 35247457  T
Q  218 cgttgaatccagatc 232  Q
    |||||||||||||||    
T  35247456 cgttgaatccagatc 35247442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 154 - 203
Target Start/End: Original strand, 32538039 - 32538088
Alignment:
Q  154 ctaccgtcaacacggagcatctacgcacctggccctttcgagcaacatca 203  Q
    ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  32538039 ctaccgtcaacacggagcatctatgcacctagccctttcgagcaacatca 32538088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 15195815 - 15195762
Alignment:
Q  150 acaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatca 203  Q
    |||||||||||||||| |||||  |||||||||| ||| ||||||| |||||||    
T  15195815 acaactaccgtcaacatggagcccctacgcacctagccttttcgagaaacatca 15195762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 32653623 - 32653675
Alignment:
Q  150 acaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatc 202  Q
    |||||| ||||||||||||||  ||||||||||| ||| |||| |||||||||    
T  32653623 acaactgccgtcaacacggagtgtctacgcacctagccatttcaagcaacatc 32653675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 29 - 366
Target Start/End: Original strand, 27308856 - 27309190
Alignment:
Q  29 aggtcttgaaaattcaatcgtagttcagatcgagggatgaacgaacgacatgaatgtaaagcagtccactgatgacgcataaagcgatcgtagcagataa 128  Q
    ||||||||||||| || ||||||||||||||||||||||||| |||||||| || | | | |||||||||  ||| ||||||||| |  | |||| ||||    
T  27308856 aggtcttgaaaatccagtcgtagttcagatcgagggatgaaccaacgacat-aacgaaca-cagtccactattgaggcataaagcaactgcagcatataa 27308953  T
Q  129 agttctgaaggtacgacatcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaacaagtctcgttgaatcca 228  Q
    |||||||| |||||||| |||||||| | |||||||||||||| || ||||||||  | |||||||| |||||||   |||| |||||| ||||||||||    
T  27308954 agttctgagggtacgacttcaacaaccatcgtcaacacggagcgtcgacgcacctaactctttcgagtaacatcacccgaaaaaagtcttgttgaatcca 27309053  T
Q  229 gatcgagggatggtatccaaccgaacatcgcacaaatgaacagaaccata-taaccaaatcttaaatccggacaaaccagattcaaaatttcaaccaaac 327  Q
    ||||||||||||||||||| |  ||||||||||| ||||||| || || |  ||||||||  || ||||| |||||||| ||||||||||||||| ||||    
T  27309054 gatcgagggatggtatccagcaaaacatcgcacatatgaacaaaatcagagaaaccaaattgtatatccgaacaaaccaaattcaaaatttcaactaaac 27309153  T
Q  328 tagagagtcggaacaaaaccaccatcaatcttcatcttc 366  Q
       |||||| | ||||||||||||  |||||||||||||    
T  27309154 --cagagtcaggacaaaaccaccacaaatcttcatcttc 27309190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 193
Target Start/End: Original strand, 25078738 - 25078781
Alignment:
Q  150 acaactaccgtcaacacggagcatctacgcacctggccctttcg 193  Q
    |||||||||||||||||||||| |||||||||||  ||||||||    
T  25078738 acaactaccgtcaacacggagcttctacgcacctaaccctttcg 25078781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Original strand, 50590189 - 50590238
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatc 202  Q
    ||||||| |||||||||||||||| |||||   |||||||||||||||||    
T  50590189 actaccgccaacacggagcatctatgcaccaaaccctttcgagcaacatc 50590238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 153 - 276
Target Start/End: Original strand, 13135740 - 13135862
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaaacaagtctcgttgaatccagatcgagggatggtatccaaccga 252  Q
    ||||||||||||||||||| ||||||||| | || ||||||| ||||||| ||  |||||||||| ||||||||||||||| ||||| | |||||||  |    
T  13135740 actaccgtcaacacggagcttctacgcacatagctctttcgaacaacatccggcaaaacaagtcttgttgaatccagatcgtgggat-gcatccaacgaa 13135838  T
Q  253 acatcgcacaaatgaacagaacca 276  Q
    ||| | ||||||||||||||||||    
T  13135839 acaacacacaaatgaacagaacca 13135862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 13135599 - 13135663
Alignment:
Q  13 gagcacagagtcacaaaggtcttgaaaattcaatcgtagttcagatcgagggatgaacgaacgac 77  Q
    |||||||||||| || | ||||||||| |||||||||||| || |||||||||||||| ||||||    
T  13135599 gagcacagagtcgcataagtcttgaaacttcaatcgtagtccaaatcgagggatgaacaaacgac 13135663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 31266950 - 31266907
Alignment:
Q  160 tcaacacggagcatctacgcacctggccctttcgagcaacatca 203  Q
    |||||||||||||||||||||||| |||||||||| ||||||||    
T  31266950 tcaacacggagcatctacgcacctagccctttcgaacaacatca 31266907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 42236700 - 42236752
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagg 205  Q
    ||||||||||||| ||||||||||||||||| || |||||||| ||| |||||    
T  42236700 actaccgtcaacatggagcatctacgcacctagctctttcgagtaacctcagg 42236752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 26063131 - 26063165
Alignment:
Q  148 caacaactaccgtcaacacggagcatctacgcacc 182  Q
    |||| ||||||||||||||||||||||||||||||    
T  26063131 caactactaccgtcaacacggagcatctacgcacc 26063165  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 26068870 - 26068903
Alignment:
Q  148 caacaactaccgtcaacacggagcatctacgcac 181  Q
    |||| |||||||||||||||||||||||||||||    
T  26068870 caactactaccgtcaacacggagcatctacgcac 26068903  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 29829822 - 29829773
Alignment:
Q  148 caacaactaccgtcaacacggagcatctacgcacctggccctttcgagca 197  Q
    |||||||||||||||||| ||||| ||||||||||   ||||||||||||    
T  29829822 caacaactaccgtcaacatggagcgtctacgcaccaaaccctttcgagca 29829773  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 23661443 - 23661390
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 206  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23661443 actaccgtcaacacggagcatctacgcacctagccctttcgagcaacatcagga 23661390  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 20490025 - 20490136
Alignment:
Q  122 cagataaagttctgaaggtacgac-atcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaa-acaagtctcg 219  Q
    |||||| |||||| |||||||||| | | | |||||||| ||||| |||| |||||||||||| ||||| ||||| ||||||  ||||| ||||| ||||    
T  20490025 cagatacagttcttaaggtacgacgaacgataactaccggcaacatggagtatctacgcacctagccctatcgagaaacatcttgagaatacaagactcg 20490124  T
Q  220 ttgaatccagat 231  Q
    || |||||||||    
T  20490125 tttaatccagat 20490136  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 1445814 - 1445762
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagg 205  Q
    ||||| |||||||||||||||| |||||||| || |||||||| | |||||||    
T  1445814 actacagtcaacacggagcatcaacgcaccttgcactttcgagaagcatcagg 1445762  T

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Target: scaffold0002 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 228
Target Start/End: Original strand, 346996 - 347106
Alignment:
Q  120 agcagataaagttctgaaggtacgac-atcaacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagg-agaaacaagtct 217  Q
    |||||||| |||||| |||||| ||| | | ||||||||||||||||| |||||||||||||||| || |||||||||||| ||||| | | ||||| ||    
T  346996 agcagatacagttcttaaggtatgacgaacgacaactaccgtcaacacagagcatctacgcacctagctctttcgagcaacctcaggcaaacacaagact 347095  T
Q  218 cgttgaatcca 228  Q
    |||||||||||    
T  347096 cgttgaatcca 347106  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 32864655 - 32864763
Alignment:
Q  120 agcagataaagttctgaaggtacgacat-caacaactaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcaggagaa-acaagtct 217  Q
    |||||||| | |||| |||||||||||  | ||||| |||||||||||||||||||||  ||||| || |||||||||||| ||||| ||| ||||| ||    
T  32864655 agcagatacaattcttaaggtacgacaaacgacaaccaccgtcaacacggagcatctatacacctagctctttcgagcaacctcaggcgaacacaagact 32864754  T
Q  218 cgttgaatc 226  Q
    |||||||||    
T  32864755 cgttgaatc 32864763  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 12120050 - 12119997
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 206  Q
    |||||||||||||| || ||||||| ||||| ||||||||||||||||||||||    
T  12120050 actaccgtcaacacagaacatctacacacctagccctttcgagcaacatcagga 12119997  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 26470393 - 26470343
Alignment:
Q  156 accgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 206  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||| ||||    
T  26470393 accgtcaacatggagcatctacgcacctagccctttcgaggaacattagga 26470343  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 26546833 - 26546783
Alignment:
Q  156 accgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 206  Q
    |||||||||| ||||||||||||||||| ||||||||||| ||||| ||||    
T  26546833 accgtcaacatggagcatctacgcacctagccctttcgaggaacattagga 26546783  T

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Target: scaffold0527 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 3321 - 3374
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 206  Q
    ||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  3321 actacagtcatcacggagcatctatgcacctagccctttcgagcaacatcagga 3374  T

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Target: scaffold0527; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 11384 - 11437
Alignment:
Q  153 actaccgtcaacacggagcatctacgcacctggccctttcgagcaacatcagga 206  Q
    ||||| |||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  11384 actacagtcatcacggagcatctatgcacctagccctttcgagcaacatcagga 11437  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 10261336 - 10261381
Alignment:
Q  152 aactaccgtcaacacggagcatctacgcacctggccctttcgagca 197  Q
    |||||||||||| ||||||| ||||||||||| |||||||| ||||    
T  10261336 aactaccgtcaatacggagcttctacgcacctagccctttcaagca 10261381  T

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