View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15684_low_1 (Length: 748)
Name: NF15684_low_1
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15684_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 52 - 734
Target Start/End: Original strand, 24422262 - 24422944
Alignment:
| Q |
52 |
gaaccaggttagtgtactaacaaaagccttatttcatcaaatacaaaataagtttatactattcaagatacggaggtaggtcaagtctatggagtcgagg |
151 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24422262 |
gaaccgggttagtgtactaacaaaaaccttatttcatcaaatacaaaataagtttatactattcaagatacggaggtaggccaagtctatggagtcgagg |
24422361 |
T |
|
| Q |
152 |
gagacacatcttgcaccatacataaggtcattttcactattggaataataaagttcactttcaaattaaataaaatatgaagagacttgttgatataatg |
251 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24422362 |
gagacacatcttgcaccatacataaggtcattttcactattggaataataaagttcactttcaaattaaataaaatatgaagagacttgttgatataatg |
24422461 |
T |
|
| Q |
252 |
gtggaaaccaatcttgcgcatggtgcaacgtcaatttgtttgtccatgttaaacaaagccatgaaggaatcaggtttcatgttcaccgtggaannnnnnn |
351 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24422462 |
gtggaaaccaatcttgcgcatggtgcaacgtcaatttgtttgtccatgttaaacaaagccatgaaggaatcaggtttcatgttcaccgtggaattttttt |
24422561 |
T |
|
| Q |
352 |
attaactctattattattttgaatcttactttatattagaaagagtaaaaaacaatggagagattcagtatctttgaaagagttggttcaaaatcataaa |
451 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24422562 |
attaactctattattattttgaatcttacattatattagaaagagtaaaaaacaatggagagattcagtatctttgaaagaggtggttcaaaatcataaa |
24422661 |
T |
|
| Q |
452 |
tttttccgaccattgaattgaaagcagaccaacctatgttgatcacatttataaatcaaagttgtcttatgctgtaattgaagatagtttcaactttcaa |
551 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24422662 |
tttttccgaccattgaattgaaagcagaccaacctatgttgatcacatttataaatcaaagttgtcttatgctgtaattgaagatagtttcaactttcaa |
24422761 |
T |
|
| Q |
552 |
tcctatcctagtagaatctttggcctaaaagcaacaactttattcagttgggccacatctggtgttgagattaacttcaaagtgattgaatggaatttca |
651 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24422762 |
tcctatcctagtagaatctttggcctaaaagcaacaactttattcagttggaccacatctggtgttgagattaacttcaaagtgattgaatggaatttca |
24422861 |
T |
|
| Q |
652 |
tttggtttatgtcacttctaattaataggaactcaatggcctaatttctagaacttttaaggtcttcccccaagctgattttg |
734 |
Q |
| |
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| T |
24422862 |
tttggtttatgtcacttctaattaataggaactcaatggcctaatttctcgaacttttaaggtctccccccaagctgattttg |
24422944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 60 - 560
Target Start/End: Complemental strand, 24411856 - 24411352
Alignment:
| Q |
60 |
ttagtgtactaacaaaagccttatttcatcaaatacaaaataagtttatactattcaagatacggaggtaggtcaagtctatggagtcgagggagacaca |
159 |
Q |
| |
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||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||||| |||||||||||| || |
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| T |
24411856 |
ttagtgttctaacaaaaaccgtatttcatcaaatacaaaataagtttatactattcaagatacggaagaaggccaagtttatggtgtcgagggagacgca |
24411757 |
T |
|
| Q |
160 |
tcttgcaccatacataaggtcattttcactattggaataataaagttcactttcaaattaaataaaatatgaagagacttgttgatataatggtggaaac |
259 |
Q |
| |
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||||| ||||| |||||||||| ||| ||||||| |||||||||||| | | ||||||||||||||||||| ||| || || || |||||||| ||| |
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| T |
24411756 |
tcttgtaccatgcataaggtca-tttagctattgggttaataaagttcattattaaattaaataaaatatgaaaagatttattaatctaatggtgtaaaa |
24411658 |
T |
|
| Q |
260 |
caatcttgcgcatggtgcaacgtcaatttgtttgtccatgttaaacaaagccatgaaggaatcaggtttcatgttcaccgtggaannnnnnnatt----- |
354 |
Q |
| |
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||||||| ||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| || |
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| T |
24411657 |
taatcttgtacatggtgtaacatcaatttgtttgtccatgttaggcaaagccatgaaggaatcaggttccatgttcactgtggatttttttatttattaa |
24411558 |
T |
|
| Q |
355 |
aactctattattattttgaatcttactttatattagaaagagt-aaaaaacaatggagagattcagtatctttgaaagagttggttcaaaatcataaatt |
453 |
Q |
| |
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|| ||||||||||||||||||||||||| |||||||||||||| |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
24411557 |
aattctattattattttgaatcttacttcatattagaaagagtaaaaaaaaaattgagagattcagtatctttgaaagaagtggttcaaaatcataaatt |
24411458 |
T |
|
| Q |
454 |
tttccgaccattgaattgaaagcagaccaacctatgttgatcacatttataaatcaaagttgtcttatgctgtaattgaagatagtttcaactttcaatc |
553 |
Q |
| |
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|||| |||||||||||||||||||||||||||| || ||||| |||| | |||||||||||||||||||||| || |||||||| |||||||||||| | |
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|
| T |
24411457 |
tttctgaccattgaattgaaagcagaccaacctttgcagatcatatttttcaatcaaagttgtcttatgctgt-atggaagatagcttcaactttcaaac |
24411359 |
T |
|
| Q |
554 |
ctatcct |
560 |
Q |
| |
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||||||| |
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| T |
24411358 |
ctatcct |
24411352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 574 - 734
Target Start/End: Complemental strand, 24411261 - 24411101
Alignment:
| Q |
574 |
gcctaaaagcaacaactttattcagttgggccacatctggtgttgagattaacttcaaagtgattgaatggaatttcatttggtttatgtcacttctaat |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24411261 |
gcctaaaagcaacaactttattcagttgggccacatctggtgttgagattaccttcaaagtgattgaatggaatttcatttggtttatgtcacttctaat |
24411162 |
T |
|
| Q |
674 |
taataggaactcaatggcctaatttctagaacttttaaggtcttcccccaagctgattttg |
734 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
24411161 |
taataggaactcaatggcctaatttctcgaacttttaaggtctccccccaagctgattttg |
24411101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 36921838 - 36921801
Alignment:
| Q |
214 |
aaattaaataaaatatgaagagacttgttgatataatg |
251 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
36921838 |
aaattaaatgaaatatgaagagacttgttgatacaatg |
36921801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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