View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15684_low_10 (Length: 313)
Name: NF15684_low_10
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15684_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 11 - 294
Target Start/End: Complemental strand, 55173272 - 55172989
Alignment:
| Q |
11 |
cacagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactatatggtaattgctaatattatgta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173272 |
cacagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactatatggtaattgctaatattatgta |
55173173 |
T |
|
| Q |
111 |
ctaatgtagcaaactaactcaattgaatgtgaaattaactatgaatgaattgcagtaccatggtggaacaaactttggaagaacaacctctgccttcaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
55173172 |
ctaatgtagcaaactaactcaattgaatgtgaaattaactatgaatgaattgcagtaccatggtggaacaaactttggaagaacaacctctgcctttaca |
55173073 |
T |
|
| Q |
211 |
acaacccgttattacgatgaggcacctcttgatgaatacggtatggagaggcagccaaaatggagccaccttagggacgcccac |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55173072 |
acaacccgttattacgatgaggcacctcttgatgaatacggtatggagaggcagccaaaatggagccaccttagggacgcccac |
55172989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 27722106 - 27722179
Alignment:
| Q |
172 |
ggtggaacaaactttggaagaacaacctctgccttcacaacaacccgttattacgatgaggcacctcttgatga |
245 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||| || || ||||||||||| |
|
|
| T |
27722106 |
ggtggaacaaattttggtagaacaacctcagcctttacaacaacacgttactacgacgaagctcctcttgatga |
27722179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 27721937 - 27722015
Alignment:
| Q |
16 |
agatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactatatggtaa |
94 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| || |||||||| || ||||| | | ||||||||||||||||||| |
|
|
| T |
27721937 |
agatctgcagaagacattgccttctcagttgctcgcttcttctctaagcatggatctttagtcaactactatatggtaa |
27722015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University