View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15684_low_17 (Length: 229)

Name: NF15684_low_17
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15684_low_17
NF15684_low_17
[»] chr4 (11 HSPs)
chr4 (4-214)||(12120913-12121123)
chr4 (3-213)||(1504569-1504779)
chr4 (3-213)||(1537243-1537453)
chr4 (11-213)||(1488824-1489026)
chr4 (66-144)||(1486802-1486880)
chr4 (86-144)||(5106312-5106370)
chr4 (104-143)||(5035626-5035665)
chr4 (100-165)||(6007647-6007712)
chr4 (92-141)||(12118050-12118099)
chr4 (100-144)||(2486310-2486354)
chr4 (93-141)||(12115382-12115430)
[»] chr7 (1 HSPs)
chr7 (11-67)||(15091284-15091340)
[»] chr5 (4 HSPs)
chr5 (100-144)||(32268773-32268817)
chr5 (107-140)||(12846943-12846976)
chr5 (3-52)||(29022133-29022182)
chr5 (11-51)||(41886296-41886336)
[»] chr6 (6 HSPs)
chr6 (10-52)||(6427508-6427550)
chr6 (100-141)||(6395781-6395822)
chr6 (100-137)||(6427432-6427469)
chr6 (100-145)||(7993320-7993365)
chr6 (100-141)||(14821628-14821669)
chr6 (12-52)||(6433172-6433212)
[»] chr2 (2 HSPs)
chr2 (1-34)||(44575087-44575120)
chr2 (11-67)||(45244526-45244582)
[»] chr8 (1 HSPs)
chr8 (100-144)||(32152209-32152253)
[»] chr3 (1 HSPs)
chr3 (112-144)||(51112983-51113015)


Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 12120913 - 12121123
Alignment:
Q  4 agatctatatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtctttctctgccgtc 103  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12120913 agatctatatttacctgatgagtgttgggaatgtgtcatcagattcctcgacaacgacgacaaccacagcaacagctccttaaagtctttctctgccgtc 12121012  T
Q  104 tcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttccaaagattcccta 203  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12121013 tcaaagcagttcctctccatcaccaaccgtcttcgatactcaataactatccgtcacccaacccggatttgccccagtggactcttccaaagattcccta 12121112  T
Q  204 acctcacctct 214  Q
    |||||||||||    
T  12121113 acctcacctct 12121123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 1504569 - 1504779
Alignment:
Q  3 cagatctatatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtctttctctgccgt 102  Q
    ||||| |||||||| ||||| ||||||||||||| ||| ||||||||||| |||||| |||||| |||| |||||||||||||| |||||||||||||||    
T  1504569 cagatttatatttatctgatcagtgttgggaatgtgtcgtcagattcctcaacaacggcaacaaacacaacaacagctccttaacgtctttctctgccgt 1504668  T
Q  103 ctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttccaaagattccct 202  Q
    |  |||||||||||| || ||||||||||||||||||||||||||||||||| || |||||||| |  || ||| |||| ||||||||||||||||||||    
T  1504669 cataaagcagttcctgtcgatcaccaaccgtcttcgattctcaataactatctgtgacccaacctgcctttgcctcagttgactcttccaaagattccct 1504768  T
Q  203 aacctcacctc 213  Q
    |||||||||||    
T  1504769 aacctcacctc 1504779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 3 - 213
Target Start/End: Original strand, 1537243 - 1537453
Alignment:
Q  3 cagatctatatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtctttctctgccgt 102  Q
    ||||| |||||||||||||||||||||||||||| ||  ||||||||||| |||||| | |  | | || ||||||||||||||||||||| | ||||||    
T  1537243 cagatttatatttacctgatgagtgttgggaatgtgtattcagattcctcaacaacggccatgatcgcaacaacagctccttaaagtctttatgtgccgt 1537342  T
Q  103 ctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttccaaagattccct 202  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||||| |  || ||| |||| ||||||||||||||||||||    
T  1537343 ctcaaagcagttcctctccatcaccaaccgtcttcaattctcaatatctatcagtgacccaaccagcctttgcctcagtcgactcttccaaagattccct 1537442  T
Q  203 aacctcacctc 213  Q
    |||||||||||    
T  1537443 aacctcacctc 1537453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 11 - 213
Target Start/End: Original strand, 1488824 - 1489026
Alignment:
Q  11 tatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaaccacagcaacagctccttaaagtctttctctgccgtctcaaagc 110  Q
    ||||||||||||||||| |||||||| ||| ||| ||||||| || ||| | || || ||| ||  || ||||| |||||||||||||||||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcctcaacgacggccacgacaacaacagtagatccttgaagtctttctctgccgtctcaaagc 1488923  T
Q  111 agttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaacccggattcgccccagtggactcttccaaagattccctaacctcac 210  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||    | |||||||    | ||| |||| |||| |||||||||||||||||||||||    
T  1488924 agttcctctccatcaccaaccatcttcgattttcaataaccatcaaagaaccaacccaccgttgcctcagtcgacttttccaaagattccctaacctcac 1489023  T
Q  211 ctc 213  Q
    |||    
T  1489024 ctc 1489026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 1486802 - 1486880
Alignment:
Q  66 accacagcaacagctccttaaagtctttctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 144  Q
    |||||| |||||  |||||||||||| |||| |  ||||||||| |||||||||||| |||||||||||| ||||||||    
T  1486802 accacaacaacatgtccttaaagtctctctccgttgtctcaaaggagttcctctccaacaccaaccgtctccgattctc 1486880  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 5106312 - 5106370
Alignment:
Q  86 aagtctttctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 144  Q
    |||||| |||||||||||||||| |||||  | |||||||||||||||| |||||||||    
T  5106312 aagtctctctctgccgtctcaaaacagtttttgtccatcaccaaccgtcctcgattctc 5106370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 143
Target Start/End: Complemental strand, 5035665 - 5035626
Alignment:
Q  104 tcaaagcagttcctctccatcaccaaccgtcttcgattct 143  Q
    ||||| ||||| ||||||||||||||||||||||||||||    
T  5035665 tcaaaacagtttctctccatcaccaaccgtcttcgattct 5035626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 6007712 - 6007647
Alignment:
Q  100 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctcaataactatccgtcacccaac 165  Q
    |||||| || ||||||||||||||||||||| |||| ||||||||  | |||||| |||| |||||    
T  6007712 cgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactatctgtcatccaac 6007647  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 12118050 - 12118099
Alignment:
Q  92 ttctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 141  Q
    |||||||| |||||||| ||||||||||| || || ||||||||||||||    
T  12118050 ttctctgctgtctcaaaacagttcctctctatgactaaccgtcttcgatt 12118099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 2486354 - 2486310
Alignment:
Q  100 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 144  Q
    ||||||||| ||||| || ||||||||||||||||| ||||||||    
T  2486354 cgtctcaaaacagtttctgtccatcaccaaccgtctccgattctc 2486310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 12115382 - 12115430
Alignment:
Q  93 tctctgccgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 141  Q
    ||||||| ||||||||  |||||||||| ||||| ||||||||||||||    
T  12115382 tctctgctgtctcaaaatagttcctctctatcactaaccgtcttcgatt 12115430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 15091284 - 15091340
Alignment:
Q  11 tatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaac 67  Q
    |||||||| ||||||||||||||||||||| |||||||| ||  |||||||||||||    
T  15091284 tatttacccgatgagtgttgggaatgcgtcttcagattcatcatcaacgacaacaac 15091340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 32268817 - 32268773
Alignment:
Q  100 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 144  Q
    |||||| || ||||| |||||||||||||||||||||||||||||    
T  32268817 cgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 140
Target Start/End: Complemental strand, 12846976 - 12846943
Alignment:
Q  107 aagcagttcctctccatcaccaaccgtcttcgat 140  Q
    ||||||||||||||||||||||||||||| ||||    
T  12846976 aagcagttcctctccatcaccaaccgtctccgat 12846943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 29022182 - 29022133
Alignment:
Q  3 cagatctatatttacctgatgagtgttgggaatgcgtcatcagattcctc 52  Q
    ||||||| ||||||||||| ||||||||||||||| || ||| |||||||    
T  29022182 cagatctttatttacctgacgagtgttgggaatgcatcttcaaattcctc 29022133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 41886296 - 41886336
Alignment:
Q  11 tatttacctgatgagtgttgggaatgcgtcatcagattcct 51  Q
    |||||||||||||||||||||||||| ||| ||| ||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 52
Target Start/End: Complemental strand, 6427550 - 6427508
Alignment:
Q  10 atatttacctgatgagtgttgggaatgcgtcatcagattcctc 52  Q
    ||||||||||||||||||||||||||| ||| || ||||||||    
T  6427550 atatttacctgatgagtgttgggaatgggtcttcggattcctc 6427508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 6395822 - 6395781
Alignment:
Q  100 cgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 141  Q
    |||||| ||||||||||||||||||||||| | |||||||||    
T  6395822 cgtctccaagcagttcctctccatcaccaatcatcttcgatt 6395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 6427469 - 6427432
Alignment:
Q  100 cgtctcaaagcagttcctctccatcaccaaccgtcttc 137  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  6427469 cgtctccaagcagttcctctccatcaccaatcgtcttc 6427432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 7993320 - 7993365
Alignment:
Q  100 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctca 145  Q
    |||||| || ||||||||||||||||||| |||||| |||||||||    
T  7993320 cgtctccaaacagttcctctccatcaccagccgtctccgattctca 7993365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 14821669 - 14821628
Alignment:
Q  100 cgtctcaaagcagttcctctccatcaccaaccgtcttcgatt 141  Q
    |||||| |||||||||||||| |||||||| |||||||||||    
T  14821669 cgtctccaagcagttcctctctatcaccaatcgtcttcgatt 14821628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 6433212 - 6433172
Alignment:
Q  12 atttacctgatgagtgttgggaatgcgtcatcagattcctc 52  Q
    ||||||||||||| |||||||||||| || |||||||||||    
T  6433212 atttacctgatgactgttgggaatgcatcttcagattcctc 6433172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 44575087 - 44575120
Alignment:
Q  1 aacagatctatatttacctgatgagtgttgggaa 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  44575087 aacagatttatatttacctgatgagtgttgggaa 44575120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 45244526 - 45244582
Alignment:
Q  11 tatttacctgatgagtgttgggaatgcgtcatcagattcctcgacaacgacaacaac 67  Q
    |||||||||||||||||||||||||| ||| | | ||||||| || ||| |||||||    
T  45244526 tatttacctgatgagtgttgggaatgtgtcttgaaattcctcaacgacggcaacaac 45244582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 32152253 - 32152209
Alignment:
Q  100 cgtctcaaagcagttcctctccatcaccaaccgtcttcgattctc 144  Q
    |||||| || ||||||||||||||||||||| |||| ||||||||    
T  32152253 cgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 51112983 - 51113015
Alignment:
Q  112 gttcctctccatcaccaaccgtcttcgattctc 144  Q
    |||||||||||||||||||||||| ||||||||    
T  51112983 gttcctctccatcaccaaccgtctccgattctc 51113015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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