View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15684_low_3 (Length: 496)
Name: NF15684_low_3
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15684_low_3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 119 - 496
Target Start/End: Complemental strand, 6491192 - 6490815
Alignment:
| Q |
119 |
aaccaaattcaaatggaatgacctcaaacacaaaagacactttatgaataacaatttcttaaaaaattcaatggcattaatgtacaaacaagtggaaatg |
218 |
Q |
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| T |
6491192 |
aaccaaattcaaatggaatcacctcaaacacaaaagacactttatgaataacaatttcttaaaaaattcaatggcattaatgtacaaacaagtggaaatg |
6491093 |
T |
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| Q |
219 |
tggatcaatacacatcaagacaaatgcacatttcattaacttgaatgcacaaaacttaagcaaattacaggattctctctaatttgtacaaagaatggtg |
318 |
Q |
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| T |
6491092 |
tggatcaatacacatcaagacaaatgcacatttcattaacttgaatgcacaaaacttaagcaaattacaggattctctctaatttgtacaaagaatggtg |
6490993 |
T |
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| Q |
319 |
aatcctgttgcctacattattacatcccatcaactcatccaacaaattcaaagcacagttgcttttactctcctgaccaactccttcctgttacatacaa |
418 |
Q |
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| T |
6490992 |
aatcctgttgcctacattattacatcccatcaactcatccaacaaattcaaagcacagttgcttttactctcctgaccaactccttcctgtcacacacaa |
6490893 |
T |
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| Q |
419 |
aacaaaatcaatgtcagaaacagaatcaaccaaatgttacatttcatgagtcacaaactatgaagcacggacactcct |
496 |
Q |
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| T |
6490892 |
aacaaaatcaatgtcagaaacagaatcaaccaaatgttacatttcatgagtcacaaactatgaagcacggacactcct |
6490815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 6491293 - 6491257
Alignment:
| Q |
18 |
agttgctaccttaaattatttccatattccatttacc |
54 |
Q |
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| T |
6491293 |
agttgctaccttaaattatttccatattccatttacc |
6491257 |
T |
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