View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15684_low_4 (Length: 480)

Name: NF15684_low_4
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15684_low_4
NF15684_low_4
[»] chr6 (11 HSPs)
chr6 (159-466)||(11170933-11171240)
chr6 (221-466)||(11276317-11276562)
chr6 (226-466)||(11197086-11197326)
chr6 (209-466)||(11209755-11210012)
chr6 (206-466)||(11156633-11156895)
chr6 (226-466)||(11241005-11241251)
chr6 (327-466)||(11161512-11161651)
chr6 (327-466)||(11200255-11200394)
chr6 (230-466)||(11133357-11133593)
chr6 (19-89)||(11171312-11171382)
chr6 (27-72)||(8382104-8382149)
[»] scaffold1207 (1 HSPs)
scaffold1207 (160-466)||(1248-1538)
[»] scaffold0734 (2 HSPs)
scaffold0734 (26-80)||(1908-1962)
scaffold0734 (209-263)||(6714-6770)
[»] chr7 (7 HSPs)
chr7 (26-85)||(2407345-2407404)
chr7 (26-72)||(7875716-7875762)
chr7 (26-86)||(40352657-40352717)
chr7 (293-401)||(8647305-8647410)
chr7 (30-72)||(41415672-41415714)
chr7 (235-344)||(3147757-3147866)
chr7 (282-352)||(8640170-8640237)
[»] chr5 (1 HSPs)
chr5 (28-72)||(5003527-5003571)
[»] chr1 (2 HSPs)
chr1 (294-352)||(15595516-15595571)
chr1 (26-71)||(33096059-33096104)
[»] chr8 (1 HSPs)
chr8 (26-72)||(18896459-18896505)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 159 - 466
Target Start/End: Complemental strand, 11171240 - 11170933
Alignment:
Q  159 caaatccacatagaatgattaattcataaagcgatccaannnnnnnncatagtgtacacaactctcttttgttttgtagatgcaaagaggctaattggtc 258  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11171240 caaatccacatagaatgattaattcataaagcgatccaattgtttttcatagtgtacacaactctcttttgttttgtagatgcaaagaggctaattggtc 11171141  T
Q  259 ggaaattttgcgatcccatagtacaaagtgatgtgaagttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataa 358  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11171140 ggaaatttagtgatcccatagtacaaagtgatgtgaagttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataa 11171041  T
Q  359 tgacgaggaaaagcattttgctgctgaagaaatatcatcgatggtattggcaaaaatggccgagatagctgaagcttaccttggatcaacagtgaaggat 458  Q
    |||||||||||| |||||||||||||||||||| ||||| ||||||||||  ||||||  ||||||||| ||| | | ||||||||||| |||| |||||    
T  11171040 tgacgaggaaaaacattttgctgctgaagaaatctcatccatggtattggtgaaaatgcgcgagatagcagaaaccttccttggatcaatagtggaggat 11170941  T
Q  459 gttgttat 466  Q
    ||||||||    
T  11170940 gttgttat 11170933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 221 - 466
Target Start/End: Complemental strand, 11276562 - 11276317
Alignment:
Q  221 tctcttttgttttgtagatgcaaagaggctaattggtcggaaattttgcgatcccatagtacaaagtgatgtgaagttgtggccattcaaagtaattggt 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11276562 tctcttttgttttgtagatgcaaagaggctaattggtcggaaatttagtgatcccatagtacaaagtgatgtgaagttgtggccattcaaagtaattggt 11276463  T
Q  321 gacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatatcatcgatggtattggcaaaaatggccg 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||  ||    
T  11276462 gacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttactgctgaagaaatctcatccatggtattggcgaaaatgcgcg 11276363  T
Q  421 agatagctgaagcttaccttggatcaacagtgaaggatgttgttat 466  Q
    ||||||| ||||| | |||||||| ||||||| |||||||||||||    
T  11276362 agatagcagaagccttccttggattaacagtggaggatgttgttat 11276317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 226 - 466
Target Start/End: Complemental strand, 11197326 - 11197086
Alignment:
Q  226 tttgttttgtagatgcaaagaggctaattggtcggaaattttgcgatcccatagtacaaagtgatgtgaagttgtggccattcaaagtaattggtgacct 325  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||  | || |||||||||||| |||||| |||||| |||||||||||||| |||||    
T  11197326 tttgttttgtagatgcaaagaggctaattggtaggaagttttgcgactcaatcgtacaaagtgatatgaagtcgtggcccttcaaagtaattggcgacct 11197227  T
Q  326 gaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatatcatcgatggtattggcaaaaatggccgagata 425  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11197226 caatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatctcatcgatggtattggcaaaaatggccgagata 11197127  T
Q  426 gctgaagcttaccttggatcaacagtgaaggatgttgttat 466  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11197126 gctgaagcttaccttggatcaacagtgaaggatgttgttat 11197086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 209 - 466
Target Start/End: Complemental strand, 11210012 - 11209755
Alignment:
Q  209 agtgtacacaactctcttttgttttgtagatgcaaagaggctaattggtcggaaattttgcgatcccatagtacaaagtgatgtgaagttgtggccattc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  11210012 agtgtacacaactctcttttgttttgtagatgcaaagaggctaattggtcggaaattttgcgaccccatagtagaaagtgatgtgaagttgtggccattc 11209913  T
Q  309 aaagtaattggtgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatatcatcgatggtattgg 408  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  11209912 aaagtaattggcgacctaaatgacaaacccatgattgttgttaactataaagacgaggaaaagcattttgctgctgaagaaatctcatccatggtattgg 11209813  T
Q  409 caaaaatggccgagatagctgaagcttaccttggatcaacagtgaaggatgttgttat 466  Q
    | ||||||   |||| ||| ||||| | |||||||||||||||| | |||||||||||    
T  11209812 cgaaaatgcgagagacagcagaagccttccttggatcaacagtggatgatgttgttat 11209755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 206 - 466
Target Start/End: Complemental strand, 11156895 - 11156633
Alignment:
Q  206 catagtgtacacaactctctt--ttgttttgtagatgcaaagaggctaattggtcggaaattttgcgatcccatagtacaaagtgatgtgaagttgtggc 303  Q
    |||||||||| ||||||| ||  ||||||||||||||||||||||||||||||| |||| ||||||||  | || |||||||||||| |||||| |||||    
T  11156895 catagtgtactcaactcttttgtttgttttgtagatgcaaagaggctaattggtaggaagttttgcgactcaatcgtacaaagtgatatgaagtcgtggc 11156796  T
Q  304 cattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatatcatcgatggt 403  Q
    | ||||||||||||||  |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  11156795 ccttcaaagtaattggcaacctcaatgacaaacccatgattgttgttaactataaagacgaggaaaagcattttgctgctgaagaaatctcatcgatggt 11156696  T
Q  404 attggcaaaaatggccgagatagctgaagcttaccttggatcaacagtgaaggatgttgttat 466  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11156695 attggcaaaaatggccgagatagctgaagtttaccttggatcaacagtgaaggatgttgttat 11156633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 226 - 466
Target Start/End: Original strand, 11241005 - 11241251
Alignment:
Q  226 tttgttttgtagatgcaaagaggctaattggtcggaaattt------tgcgatcccatagtacaaagtgatgtgaagttgtggccattcaaagtaattgg 319  Q
    |||||||||||||||||||||||||||||||| |||| |||      || || |||||  ||||||||||| ||||||||||||| ||||||||||||||    
T  11241005 tttgttttgtagatgcaaagaggctaattggtaggaagtttaagttttgtgaccccatcatacaaagtgatatgaagttgtggcccttcaaagtaattgg 11241104  T
Q  320 tgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatatcatcgatggtattggcaaaaatggcc 419  Q
     |||||||||||||||| ||||| | ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  11241105 cgacctgaatgacaaacacatgactattgttaactataatgacgaggaaaagcatttcgctgctgaagaaatctcatcgatggtattggcaaaaatggcc 11241204  T
Q  420 gagatagctgaagcttaccttggatcaacagtgaaggatgttgttat 466  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  11241205 aagatagctgaagcttaccttggatcaacagtgaaggatgttgttat 11241251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 327 - 466
Target Start/End: Complemental strand, 11161651 - 11161512
Alignment:
Q  327 aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatatcatcgatggtattggcaaaaatggccgagatag 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||| |||||| |    
T  11161651 aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgcagaagaaatctcatccatggtattgacaaaaatgggcgagattg 11161552  T
Q  427 ctgaagcttaccttggatcaacagtgaaggatgttgttat 466  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11161551 ctgaagcttaccttggatcaacagtgaaggatgttgttat 11161512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 327 - 466
Target Start/End: Complemental strand, 11200394 - 11200255
Alignment:
Q  327 aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatatcatcgatggtattggcaaaaatggccgagatag 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||| |||||| |    
T  11200394 aatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgcagaagaaatctcatccatggtattgacaaaaatgggcgagattg 11200295  T
Q  427 ctgaagcttaccttggatcaacagtgaaggatgttgttat 466  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  11200294 ctgaagcttaccttggatcaacagtgaaggatgttgttat 11200255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 230 - 466
Target Start/End: Complemental strand, 11133593 - 11133357
Alignment:
Q  230 ttttgtagatgcaaagaggctaattggtcggaaattttgcgatcccatagtacaaagtgatgtgaagttgtggccattcaaagtaattggtgacctgaat 329  Q
    |||||||||||| |||||||| |||||| |  ||||| | || || ||||| || |||||| |||| ||||||||||| ||||||||||||| | | |||    
T  11133593 ttttgtagatgcgaagaggctcattggtagagaatttagtgaccctatagttcagagtgatatgaaattgtggccatttaaagtaattggtggcataaat 11133494  T
Q  330 gacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaatatcatcgatggtattggcaaaaatggccgagatagctg 429  Q
    ||||||||||  |||||||| || || ||||  |||||||| |||||||||||||| ||||||||||| ||||||||| |||||||    ||||| || |    
T  11133493 gacaaacccaatattgttgtcaattacaatggagaggaaaaacattttgctgctgaggaaatatcatcaatggtattgacaaaaattcgtgagattgcag 11133394  T
Q  430 aagcttaccttggatcaacagtgaaggatgttgttat 466  Q
    ||| ||||||||||||||||||||||||||| |||||    
T  11133393 aagtttaccttggatcaacagtgaaggatgtcgttat 11133357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 11171382 - 11171312
Alignment:
Q  19 cataggagctgatttgttattgttttttacaagggaccaaaatcccaagattgtattacttacggggttaa 89  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  11171382 cataggagctgatttgttattgttttttataagggaccaaaatcccaagattgtattacttacggggttaa 11171312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 8382149 - 8382104
Alignment:
Q  27 ctgatttgttattgttttttacaagggaccaaaatcccaagattgt 72  Q
    ||||||||||||||||||||| |||||| ||||||  |||||||||    
T  8382149 ctgatttgttattgttttttataagggatcaaaattgcaagattgt 8382104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 147; Significance: 3e-77; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 160 - 466
Target Start/End: Complemental strand, 1538 - 1248
Alignment:
Q  160 aaatccacatagaatgattaattcataaagcgatccaannnnnnnn--catagtgtacacaactctcttttgttttgtagatgcaaagaggctaattggt 257  Q
    ||||||||||| |||||||||| ||||||||||| |||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1538 aaatccacataaaatgattaatacataaagcgatacaattgtttttttcatagtgtacacaactctcttttgttttgtagatgcaaagaggctaattggt 1439  T
Q  258 cggaaattttgcgatcccatagtacaaagtgatgtgaagttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactata 357  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| |                   | |||||||||||||||||||||||||    
T  1438 cggaaattttgcgatcccatagtagaaagtgatgtgaagttgtggccattcata------------------cataaacccatgattgttgttaactata 1357  T
Q  358 atgacgaggaaaagcattttgctgctgaagaaatatcatcgatggtattggcaaaaatggccgagatagctgaagcttaccttggatcaacagtgaagga 457  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||  ||||| ||| ||||| | |||||||||||||||| ||||    
T  1356 atgacgaggaaaagcattttgctgctgaagaaatctcatccatggtattggcgaaaatgcgcgagacagcagaagccttccttggatcaacagtggagga 1257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 1962 - 1908
Alignment:
Q  26 gctgatttgttattgttttttacaagggaccaaaatcccaagattgtattactta 80  Q
    |||||||||||||||||||||| | |||||||||||| ||||||||| |||||||    
T  1962 gctgatttgttattgttttttataggggaccaaaatctcaagattgtgttactta 1908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 6770 - 6714
Alignment:
Q  209 agtgtacacaactct-ct-tttgttttgtagatgcaaagaggctaattggtcggaaa 263  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||| |||||    
T  6770 agtgtacacaactcttctgtttgttttgtagatgcaaagaggctaattggttggaaa 6714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 2407404 - 2407345
Alignment:
Q  26 gctgatttgttattgttttttacaagggaccaaaatcccaagattgtattacttacgggg 85  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||  |||||| ||||    
T  2407404 gctgatttgttattgttttttataggggaccaaaatcgcaagattgtgatacttaggggg 2407345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 7875762 - 7875716
Alignment:
Q  26 gctgatttgttattgttttttacaagggaccaaaatcccaagattgt 72  Q
    |||||||||||||||||||||| | |||||||||||| |||||||||    
T  7875762 gctgatttgttattgttttttataggggaccaaaatcgcaagattgt 7875716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 40352717 - 40352657
Alignment:
Q  26 gctgatttgttattgttttttacaagggaccaaaatcccaagattgtattacttacggggt 86  Q
    |||||||||||||||||||||| | | |||||||||| |||||||||  |||||| |||||    
T  40352717 gctgatttgttattgttttttataggcgaccaaaatcgcaagattgtgatacttagggggt 40352657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 293 - 401
Target Start/End: Complemental strand, 8647410 - 8647305
Alignment:
Q  293 gaagttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaactataatgacgaggaaaagcattttgctgctgaagaaata 392  Q
    |||||||||||||||||| || ||||| |   |||||||||||||||||||| ||||||| || || |  || || |||| || |  |||||| ||||||    
T  8647410 gaagttgtggccattcaaggtcattgggg---tgaatgacaaacccatgattattgttaaatacaagggtgaagagaagcgttattgtgctgaggaaata 8647314  T
Q  393 tcatcgatg 401  Q
    |||||||||    
T  8647313 tcatcgatg 8647305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Complemental strand, 41415714 - 41415672
Alignment:
Q  30 atttgttattgttttttacaagggaccaaaatcccaagattgt 72  Q
    |||||||||||||||||| ||||| |||||||| |||||||||    
T  41415714 atttgttattgttttttataaggggccaaaatcgcaagattgt 41415672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 344
Target Start/End: Complemental strand, 3147866 - 3147757
Alignment:
Q  235 tagatgcaaagaggctaattggtcggaaattttgcgatcccatagtacaaagtgatgtgaagttgtggccattcaaagtaattggtgacctgaatgacaa 334  Q
    |||||||||||||| |||||||| |||| ||| | ||| |  | || |||| |||| ||| ||||||||||||||| || ||| | |   ||||||||||    
T  3147866 tagatgcaaagaggttaattggtaggaagtttggtgattctgttgttcaaaatgatatgatgttgtggccattcaaggtcatttgcggagtgaatgacaa 3147767  T
Q  335 acccatgatt 344  Q
    ||||||||||    
T  3147766 acccatgatt 3147757  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 352
Target Start/End: Original strand, 8640170 - 8640237
Alignment:
Q  282 caaagtgatgtgaagttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaa 352  Q
    |||| |||| ||||||||||||||||||| || ||||| |   ||||||||||||||| |||| |||||||    
T  8640170 caaaatgatatgaagttgtggccattcaaggtcattgggg---tgaatgacaaacccacgattattgttaa 8640237  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 5003571 - 5003527
Alignment:
Q  28 tgatttgttattgttttttacaagggaccaaaatcccaagattgt 72  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||    
T  5003571 tgatttgttattgttttttataagggatcaaaatcgcaagattgt 5003527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 15595571 - 15595516
Alignment:
Q  294 aagttgtggccattcaaagtaattggtgacctgaatgacaaacccatgattgttgttaa 352  Q
    ||||||||||||||||| || |||||||   |||||||||||||||||||| |||||||    
T  15595571 aagttgtggccattcaaggtcattggtg---tgaatgacaaacccatgattattgttaa 15595516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 33096104 - 33096059
Alignment:
Q  26 gctgatttgttattgttttttacaagggaccaaaatcccaagattg 71  Q
    |||||||||||||| ||||||| |||||||||||||  ||||||||    
T  33096104 gctgatttgttattattttttataagggaccaaaattgcaagattg 33096059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 72
Target Start/End: Complemental strand, 18896505 - 18896459
Alignment:
Q  26 gctgatttgttattgttttttacaagggaccaaaatcccaagattgt 72  Q
    |||||||| ||||||||||||| | |||||||||||| |||||||||    
T  18896505 gctgatttattattgttttttataggggaccaaaatcgcaagattgt 18896459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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