View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15684_low_6 (Length: 383)
Name: NF15684_low_6
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15684_low_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 33419929 - 33420302
Alignment:
| Q |
10 |
cataggggatcaaacatgcaattaagcttaaattgaaaattaagtgcatcgatcatctaaataaatatcatatacatacatataccatgaaacgggaatc |
109 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33419929 |
cataagggatcaaacatgcaattaagcctaaattgaaaattaagtgcatcgatcatctaaataaatatcatatacatacatataccatgaaacgggaatc |
33420028 |
T |
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| Q |
110 |
acattacagtacatttttggttctagtaatctccaaataaatcatgtttcataaacaagatcactatattagctttatcttgtttaagaataaatatgta |
209 |
Q |
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| T |
33420029 |
acattacagtacatttttggttctagtaatctccaaataaatcatgtttcataaacaagatcactatattagctttatcttgtttaagaataaatatgta |
33420128 |
T |
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| Q |
210 |
tcatcaaacaatgatatctattaggtactcttcttcacccacatgcaacaaatgagacccttcttctatgatcttcaaaccagcctcgttcgctcgacta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33420129 |
tcatcaaacaatgatatctattaggtactcttcttcacccacatgcaacaaatgagacccttcttctatgatcttcaaaccagcctcgttcgctcgacta |
33420228 |
T |
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| Q |
310 |
agatgctcacaaggactaagctcaaatccaacatggctcatttcccctgcatctaacaacaaactatgaaaacc |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33420229 |
agatgctcacaaggactaagctcaaatccaacatggctcatttcccctgcatctaacaacaaactatgaaaacc |
33420302 |
T |
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