View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15684_low_8 (Length: 358)
Name: NF15684_low_8
Description: NF15684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15684_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 55173249 - 55173593
Alignment:
| Q |
1 |
caatatcttcagcagatctctgtgatactggatcaccaaatactctgtactgagcggtccaattttcagtccatagggaaggcttgtatggtttgtttgg |
100 |
Q |
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| T |
55173249 |
caatatcttcagcagatctctgtgatactggatcaccaaatactctgtactgagcggtccaattttcagtccatagggaaggcttgtatggtttgtttgg |
55173348 |
T |
|
| Q |
101 |
tcctgagaaggtatcaccacaatgtcttccattgcatgcattgatctgccaaataaaattattaaactcatgatcacatcatgactgtcctcactttgtt |
200 |
Q |
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| T |
55173349 |
tcctgagaaggtatcaccacaatgtcttccattgcatgcattgatctgccaaataaaattattaaactcatgatcacatcatgactgtcctcactttgtt |
55173448 |
T |
|
| Q |
201 |
ttatgcctaaaattaattacttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactcctatgtccaaggccactgccatatttgcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
55173449 |
ttatgcctaaaattaattacttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactccgatgtccaaggccactgccatatttgcg |
55173548 |
T |
|
| Q |
301 |
gcccactgaacataactatctcccttctcttcataagcaagttga |
345 |
Q |
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| T |
55173549 |
gcccactgaacataactatctcccttctcttcataagcaagttga |
55173593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 48 - 152
Target Start/End: Complemental strand, 27721690 - 27721586
Alignment:
| Q |
48 |
tactgagcggtccaattttcagtccatagggaaggcttgtatggtttgtttggtcctgagaaggtatcaccacaatgtcttccattgcatgcattgatct |
147 |
Q |
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|||||||| ||||| ||||||||||||| | |||| ||||||||||||||||| |||| |||||||||||||| || ||||||||||||||||| |||| |
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| T |
27721690 |
tactgagcagtccagttttcagtccatatgaaaggtttgtatggtttgtttggacctgtaaaggtatcaccacagtgccttccattgcatgcattaatct |
27721591 |
T |
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| Q |
148 |
gccaa |
152 |
Q |
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||||| |
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| T |
27721590 |
gccaa |
27721586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 219 - 344
Target Start/End: Complemental strand, 27721296 - 27721171
Alignment:
| Q |
219 |
acttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactcctatgtccaaggccactgccatatttgcggcccactgaacataacta |
318 |
Q |
| |
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|||||| || ||||| ||||||||||||||||||||||||| ||| |||||||| | | | | |||||||| ||||| ||||||||||||||| || |
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| T |
27721296 |
acttacaactggatcaggagcatccttctgcttgcacatgacccatggaactccattatatagtgaaactgccatttttgcagcccactgaacataatta |
27721197 |
T |
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| Q |
319 |
tctcccttctcttcataagcaagttg |
344 |
Q |
| |
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||||| | |||||||||||||||| |
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| T |
27721196 |
tctccatcagcttcataagcaagttg |
27721171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 42989290 - 42989343
Alignment:
| Q |
219 |
acttacgacgggatcgggagcatccttctgcttgcacatgatccacggaactcc |
272 |
Q |
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|||||| || ||||| |||||||| | |||||||||||||||||||||||||| |
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| T |
42989290 |
acttacaacaggatcaggagcatcatcttgcttgcacatgatccacggaactcc |
42989343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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