View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15685_high_10 (Length: 227)

Name: NF15685_high_10
Description: NF15685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15685_high_10
NF15685_high_10
[»] chr2 (18 HSPs)
chr2 (43-126)||(8346569-8346652)
chr2 (154-221)||(8345675-8345742)
chr2 (6-46)||(1944555-1944595)
chr2 (6-46)||(2100104-2100144)
chr2 (6-46)||(45065601-45065641)
chr2 (6-43)||(7765818-7765855)
chr2 (6-43)||(20360531-20360568)
chr2 (6-43)||(32750366-32750403)
chr2 (6-43)||(43657949-43657986)
chr2 (6-45)||(11711346-11711385)
chr2 (6-39)||(6761552-6761585)
chr2 (6-43)||(13775798-13775835)
chr2 (6-39)||(16241295-16241328)
chr2 (6-43)||(20427088-20427125)
chr2 (6-43)||(32197463-32197500)
chr2 (6-43)||(42263494-42263531)
chr2 (6-43)||(44737307-44737344)
chr2 (6-46)||(38598543-38598583)
[»] chr3 (17 HSPs)
chr3 (6-43)||(13826199-13826236)
chr3 (6-43)||(335399-335436)
chr3 (6-43)||(1122362-1122399)
chr3 (6-43)||(9190115-9190152)
chr3 (6-43)||(23825236-23825273)
chr3 (6-43)||(25113373-25113410)
chr3 (6-41)||(9465097-9465132)
chr3 (6-43)||(379160-379197)
chr3 (6-39)||(6086929-6086962)
chr3 (6-39)||(9440156-9440189)
chr3 (6-43)||(18765282-18765319)
chr3 (6-43)||(19202274-19202311)
chr3 (6-43)||(26123077-26123114)
chr3 (6-43)||(40214924-40214961)
chr3 (6-43)||(51698138-51698175)
chr3 (6-43)||(52114048-52114085)
chr3 (6-46)||(25846532-25846572)
[»] scaffold0009 (1 HSPs)
scaffold0009 (6-46)||(3652-3692)
[»] chr4 (13 HSPs)
chr4 (6-46)||(5970300-5970340)
chr4 (6-43)||(2385219-2385256)
chr4 (6-43)||(31854403-31854440)
chr4 (6-43)||(56216321-56216358)
chr4 (9-43)||(38687935-38687969)
chr4 (6-43)||(2279611-2279648)
chr4 (6-39)||(4758805-4758838)
chr4 (6-39)||(20688503-20688536)
chr4 (6-43)||(31227358-31227395)
chr4 (6-43)||(32517794-32517831)
chr4 (6-43)||(39877490-39877527)
chr4 (6-43)||(47949026-47949063)
chr4 (6-39)||(53621356-53621389)
[»] scaffold0123 (1 HSPs)
scaffold0123 (6-43)||(29331-29368)
[»] chr8 (15 HSPs)
chr8 (6-43)||(2339377-2339414)
chr8 (6-43)||(11293211-11293248)
chr8 (6-39)||(25848054-25848087)
chr8 (6-43)||(25878196-25878233)
chr8 (6-43)||(29563745-29563782)
chr8 (6-39)||(30923949-30923982)
chr8 (6-43)||(34028470-34028507)
chr8 (6-43)||(40465262-40465299)
chr8 (6-43)||(41915681-41915718)
chr8 (8-41)||(42189892-42189925)
chr8 (6-39)||(43135131-43135164)
chr8 (6-43)||(43295087-43295124)
chr8 (6-43)||(45145952-45145989)
chr8 (6-46)||(8242310-8242350)
chr8 (7-43)||(37564655-37564691)
[»] chr7 (6 HSPs)
chr7 (6-43)||(20397902-20397939)
chr7 (6-43)||(3411419-3411456)
chr7 (6-43)||(5347747-5347784)
chr7 (6-43)||(7107717-7107754)
chr7 (6-43)||(12763316-12763353)
chr7 (6-43)||(34281693-34281730)
[»] chr6 (7 HSPs)
chr6 (6-43)||(31971054-31971091)
chr6 (6-42)||(17225268-17225304)
chr6 (6-39)||(885630-885663)
chr6 (6-43)||(6047820-6047857)
chr6 (6-43)||(7405531-7405568)
chr6 (6-43)||(8558938-8558975)
chr6 (6-43)||(24949655-24949692)
[»] chr5 (13 HSPs)
chr5 (6-43)||(7750005-7750042)
chr5 (6-43)||(9601617-9601654)
chr5 (6-43)||(41989651-41989688)
chr5 (8-43)||(2959263-2959298)
chr5 (8-43)||(2967732-2967767)
chr5 (8-43)||(15569355-15569390)
chr5 (8-43)||(31802982-31803017)
chr5 (6-40)||(6338342-6338376)
chr5 (9-43)||(41815275-41815309)
chr5 (6-43)||(2825947-2825984)
chr5 (6-43)||(26898278-26898315)
chr5 (6-39)||(29374257-29374290)
chr5 (6-39)||(37699808-37699841)
[»] chr1 (9 HSPs)
chr1 (6-43)||(15289860-15289897)
chr1 (6-43)||(26545084-26545121)
chr1 (6-43)||(26550311-26550348)
chr1 (6-41)||(33325420-33325455)
chr1 (6-39)||(2352396-2352429)
chr1 (6-43)||(2961128-2961165)
chr1 (6-43)||(6784746-6784783)
chr1 (10-43)||(9548763-9548796)
chr1 (6-39)||(14281677-14281710)
[»] scaffold2107 (1 HSPs)
scaffold2107 (6-43)||(530-567)
[»] scaffold0592 (1 HSPs)
scaffold0592 (6-43)||(466-503)
[»] scaffold0221 (1 HSPs)
scaffold0221 (6-43)||(11117-11154)
[»] scaffold0002 (1 HSPs)
scaffold0002 (6-43)||(492329-492366)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 8346652 - 8346569
Alignment:
Q  43 tttttagaacacgaaaagattgatgctccttgaaacttgaacgagtaactattaaaagtactccttcaatctatctcatttgtt 126  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8346652 tttttagaacacgaaaagattgatgctccttgaaacttgaacaagtaactattaaaagtactccttcaatctatctcatttgtt 8346569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 8345742 - 8345675
Alignment:
Q  154 atttttcctttaacatatctaaccattcgttttatagctaataaatgtgacttcccagggtcatgcat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8345742 atttttcctttaacatatctaaccattcgttttatagctaataaatgtgacttcccagggtcatgcat 8345675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 1944595 - 1944555
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttctttt 46  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  1944595 acatacattattcaatgtatctaaaaagtcaactttctttt 1944555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 2100104 - 2100144
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttctttt 46  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  2100104 acatacattattcaatgtatctaaaaagtcaactttctttt 2100144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 45065641 - 45065601
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttctttt 46  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  45065641 acatacattattcaatgtatctaaaaagtcaactttctttt 45065601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 7765855 - 7765818
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  7765855 acatacattattcaatgtatctaaaaagtcaactttct 7765818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 20360531 - 20360568
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  20360531 acatacattattcaatgtatctaaaaagtcaactttct 20360568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 32750403 - 32750366
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  32750403 acatacattattcaatgtatctaaaaagtcaactttct 32750366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 43657986 - 43657949
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  43657986 acatacattattcaatgtatctaaaaagtcaactttct 43657949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 11711385 - 11711346
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttcttt 45  Q
    ||||||||| |||||||||||||||||||||| |||||||    
T  11711385 acatacattattcaatgtatctaaaaagtcaattttcttt 11711346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 6761552 - 6761585
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  6761552 acatacattattcaatgtatctaaaaagtcaact 6761585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 13775798 - 13775835
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| || |||||||||||||||||||||||||    
T  13775798 acatacattatttaatgtatctaaaaagtcaactttct 13775835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 16241328 - 16241295
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  16241328 acatacattattcaatgtatctaaaaagtcaact 16241295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 20427088 - 20427125
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  20427088 acatacattattcaatgtatctaaaaagtcaattttct 20427125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 32197463 - 32197500
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  32197463 acatacattattcaatgtatctaaaaaatcaactttct 32197500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 42263531 - 42263494
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  42263531 acatacattattcaatgtatctaaaaaatcaactttct 42263494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 44737344 - 44737307
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  44737344 acatacattattcaatgtatctaaaaagtcaattttct 44737307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 38598543 - 38598583
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttctttt 46  Q
    ||||| ||| ||||||||||||||||||| |||||||||||    
T  38598543 acatatattattcaatgtatctaaaaagtaaactttctttt 38598583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 13826199 - 13826236
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||||||||||||||||||||||||||||||||    
T  13826199 acatacattcttcaatgtatctaaaaagtcaactttct 13826236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 335436 - 335399
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  335436 acatacattattcaatgtatctaaaaagtcaactttct 335399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 1122362 - 1122399
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    |||||||||||||||||||||||||||||||| |||||    
T  1122362 acatacattcttcaatgtatctaaaaagtcaattttct 1122399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 9190115 - 9190152
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  9190115 acatacattattcaatgtatctaaaaagtcaactttct 9190152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 23825236 - 23825273
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  23825236 acatacattattcaatgtatctaaaaagtcaactttct 23825273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 25113410 - 25113373
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  25113410 acatacattattcaatgtatctaaaaagtcaactttct 25113373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 9465132 - 9465097
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaacttt 41  Q
    ||||||||| ||||||||||||||||||||||||||    
T  9465132 acatacattattcaatgtatctaaaaagtcaacttt 9465097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 379160 - 379197
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  379160 acataaattattcaatgtatctaaaaagtcaactttct 379197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 6086962 - 6086929
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  6086962 acatacattattcaatgtatctaaaaagtcaact 6086929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 9440189 - 9440156
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  9440189 acatacattattcaatgtatctaaaaagtcaact 9440156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 18765319 - 18765282
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  18765319 acatacattattcaatgtatctaaaaaatcaactttct 18765282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 19202311 - 19202274
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    |||||| || ||||||||||||||||||||||||||||    
T  19202311 acataccttattcaatgtatctaaaaagtcaactttct 19202274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 26123077 - 26123114
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  26123077 acatacattattcaatgtatctaaaaagtcatctttct 26123114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 40214961 - 40214924
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  40214961 acatacattatccaatgtatctaaaaagtcaactttct 40214924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 51698175 - 51698138
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| || |||||||||||||||||||||||||    
T  51698175 acatacattattgaatgtatctaaaaagtcaactttct 51698138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 52114085 - 52114048
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  52114085 acatacattattcaatgtatctaaaaaatcaactttct 52114048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 25846572 - 25846532
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttctttt 46  Q
    ||||||||| ||||||||||||||||| |||||| ||||||    
T  25846572 acatacattattcaatgtatctaaaaaatcaactgtctttt 25846532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 3692 - 3652
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttctttt 46  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  3692 acatacattattcaatgtatctaaaaagtcaactttctttt 3652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 5970340 - 5970300
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttctttt 46  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  5970340 acatacattattcaatgtatctaaaaagtcaactttctttt 5970300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 2385256 - 2385219
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  2385256 acatacattattcaatgtatctaaaaagtcaactttct 2385219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 31854440 - 31854403
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  31854440 acatacattattcaatgtatctaaaaagtcaactttct 31854403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 56216321 - 56216358
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  56216321 acatacattattcaatgtatctaaaaagtcaactttct 56216358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 38687969 - 38687935
Alignment:
Q  9 tacattcttcaatgtatctaaaaagtcaactttct 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  38687969 tacattattcaatgtatctaaaaagtcaactttct 38687935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 2279611 - 2279648
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| || |||||||||||||||||||||||||    
T  2279611 acatacattattgaatgtatctaaaaagtcaactttct 2279648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 4758838 - 4758805
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  4758838 acatacattattcaatgtatctaaaaagtcaact 4758805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 20688503 - 20688536
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  20688503 acatacattattcaatgtatctaaaaagtcaact 20688536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 31227358 - 31227395
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| || |||||||||||||||||||||||||    
T  31227358 acatacattatttaatgtatctaaaaagtcaactttct 31227395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 32517831 - 32517794
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  32517831 acatatattattcaatgtatctaaaaagtcaactttct 32517794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 39877490 - 39877527
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  39877490 acatacattattcaatgtacctaaaaagtcaactttct 39877527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 47949026 - 47949063
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  47949026 acatacattattcaatgtatctaaaaaatcaactttct 47949063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 53621389 - 53621356
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  53621389 acatacattattcaatgtatctaaaaagtcaact 53621356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 29331 - 29368
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  29331 acatacattattcaatgtatctaaaaagtcaactttct 29368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 2339377 - 2339414
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  2339377 acatacattattcaatgtatctaaaaagtcaactttct 2339414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 11293248 - 11293211
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  11293248 acatacattattcaatgtatctaaaaagtcaactttct 11293211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 25848054 - 25848087
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  25848054 acatacattattcaatgtatctaaaaagtcaact 25848087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 25878233 - 25878196
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    |||||||||||||||||||| ||||||||||| |||||    
T  25878233 acatacattcttcaatgtatttaaaaagtcaattttct 25878196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 29563745 - 29563782
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| || |||||||||||||||||||||||||    
T  29563745 acatacattattgaatgtatctaaaaagtcaactttct 29563782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 30923982 - 30923949
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  30923982 acatacattattcaatgtatctaaaaagtcaact 30923949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 34028470 - 34028507
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  34028470 acatacattattcaatgtatctaaaaggtcaactttct 34028507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 40465299 - 40465262
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  40465299 acatacattattcaatgtatctaaaaagtcaattttct 40465262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 41915681 - 41915718
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  41915681 acatacattattcaatgtatctaaaaagtcaattttct 41915718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 42189892 - 42189925
Alignment:
Q  8 atacattcttcaatgtatctaaaaagtcaacttt 41  Q
    ||||||| ||||||||||||||||||||||||||    
T  42189892 atacattattcaatgtatctaaaaagtcaacttt 42189925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 43135131 - 43135164
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  43135131 acatacattattcaatgtatctaaaaagtcaact 43135164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 43295124 - 43295087
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  43295124 acatacattattcaatgtatctaaaaagttaactttct 43295087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 45145952 - 45145989
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  45145952 acatacattattcaatgtatctaaaaagtcaattttct 45145989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 8242310 - 8242350
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttctttt 46  Q
    ||||||||| ||||||||||||||||| |||| ||||||||    
T  8242310 acatacattattcaatgtatctaaaaaatcaaatttctttt 8242350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 43
Target Start/End: Complemental strand, 37564691 - 37564655
Alignment:
Q  7 catacattcttcaatgtatctaaaaagtcaactttct 43  Q
    |||||||| |||||||||| |||||||||||||||||    
T  37564691 catacattattcaatgtatttaaaaagtcaactttct 37564655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 20397902 - 20397939
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  20397902 acatacattattcaatgtatctaaaaagtcaactttct 20397939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 3411419 - 3411456
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  3411419 acatacattattcaatgtatctaaaaagtcaaatttct 3411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 5347784 - 5347747
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| || |||||||||||||||||||||||||    
T  5347784 acatacattattgaatgtatctaaaaagtcaactttct 5347747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 7107717 - 7107754
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  7107717 acataaattattcaatgtatctaaaaagtcaactttct 7107754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 12763316 - 12763353
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  12763316 acatacattattcaatgtatctaaaaagtcaattttct 12763353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 34281730 - 34281693
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  34281730 acatacattattcaatgtatgtaaaaagtcaactttct 34281693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 31971091 - 31971054
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  31971091 acatacattattcaatgtatctaaaaagtcaactttct 31971054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 17225304 - 17225268
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttc 42  Q
    ||||||||| |||||||||||||||||||||||||||    
T  17225304 acatacattattcaatgtatctaaaaagtcaactttc 17225268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 885663 - 885630
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  885663 acatacattattcaatgtatctaaaaagtcaact 885630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 6047857 - 6047820
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  6047857 acatacattattcaatgtatctaaaaagttaactttct 6047820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 7405531 - 7405568
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  7405531 acatacattattcaatgtatctaaaaagtcaattttct 7405568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 8558975 - 8558938
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  8558975 acatacattattcaatgtatctaaaaagtcaattttct 8558938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 24949692 - 24949655
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  24949692 acatacattattcaatgtatctaaaaagtcaattttct 24949655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 7750005 - 7750042
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  7750005 acatacattattcaatgtatctaaaaagtcaactttct 7750042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 9601654 - 9601617
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  9601654 acatacattattcaatgtatctaaaaagtcaactttct 9601617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 41989651 - 41989688
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  41989651 acatacattattcaatgtatctaaaaagtcaactttct 41989688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 2959298 - 2959263
Alignment:
Q  8 atacattcttcaatgtatctaaaaagtcaactttct 43  Q
    |||||||||||||||||||||||||||||| |||||    
T  2959298 atacattcttcaatgtatctaaaaagtcaattttct 2959263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 2967767 - 2967732
Alignment:
Q  8 atacattcttcaatgtatctaaaaagtcaactttct 43  Q
    |||||||||||||||||||||||||||||| |||||    
T  2967767 atacattcttcaatgtatctaaaaagtcaattttct 2967732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 15569390 - 15569355
Alignment:
Q  8 atacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||| ||||||||||||||||||||||||||||    
T  15569390 atacattattcaatgtatctaaaaagtcaactttct 15569355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 43
Target Start/End: Complemental strand, 31803017 - 31802982
Alignment:
Q  8 atacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||| ||||||||||||||||||||||||||||    
T  31803017 atacattattcaatgtatctaaaaagtcaactttct 31802982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Complemental strand, 6338376 - 6338342
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactt 40  Q
    ||||||||| |||||||||||||||||||||||||    
T  6338376 acatacattattcaatgtatctaaaaagtcaactt 6338342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 41815275 - 41815309
Alignment:
Q  9 tacattcttcaatgtatctaaaaagtcaactttct 43  Q
    |||||| ||||||||||||||||||||||||||||    
T  41815275 tacattattcaatgtatctaaaaagtcaactttct 41815309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 2825947 - 2825984
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  2825947 acatacattattcaatgtatctaaaaagtcaattttct 2825984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 26898278 - 26898315
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  26898278 acatacattattcaatgcatctaaaaagtcaactttct 26898315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 29374257 - 29374290
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  29374257 acatacattattcaatgtatctaaaaagtcaact 29374290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 37699841 - 37699808
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  37699841 acatacattattcaatgtatctaaaaagtcaact 37699808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 15289860 - 15289897
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  15289860 acatacattattcaatgtatctaaaaagtcaactttct 15289897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 26545084 - 26545121
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  26545084 acatacattattcaatgtatctaaaaagtcaactttct 26545121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 26550348 - 26550311
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  26550348 acatacattattcaatgtatctaaaaagtcaactttct 26550311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Original strand, 33325420 - 33325455
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaacttt 41  Q
    ||||||||| ||||||||||||||||||||||||||    
T  33325420 acatacattattcaatgtatctaaaaagtcaacttt 33325455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 2352396 - 2352429
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  2352396 acatacattattcaatgtatctaaaaagtcaact 2352429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 2961165 - 2961128
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| || |||||||||||||||||||||||||    
T  2961165 acatacattattgaatgtatctaaaaagtcaactttct 2961128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 6784746 - 6784783
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  6784746 acatacattattcaatgtatctaaaaaatcaactttct 6784783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 43
Target Start/End: Original strand, 9548763 - 9548796
Alignment:
Q  10 acattcttcaatgtatctaaaaagtcaactttct 43  Q
    |||||||||||||||||||||||||||| |||||    
T  9548763 acattcttcaatgtatctaaaaagtcaattttct 9548796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 14281677 - 14281710
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaact 39  Q
    ||||||||| ||||||||||||||||||||||||    
T  14281677 acatacattattcaatgtatctaaaaagtcaact 14281710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2107 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold2107
Description:

Target: scaffold2107; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 530 - 567
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  530 acatacattattcaatgtatctaaaaagtcaattttct 567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 466 - 503
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  466 acatacattattcaatgtatctaaaaagtcaaccttct 503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 11117 - 11154
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  11117 acatatattattcaatgtatctaaaaagtcaactttct 11154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 492366 - 492329
Alignment:
Q  6 acatacattcttcaatgtatctaaaaagtcaactttct 43  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  492366 acatacattattcaatgtatctaaaaaatcaactttct 492329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University