View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15685_low_1 (Length: 908)
Name: NF15685_low_1
Description: NF15685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15685_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 845; Significance: 0; HSPs: 21)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 845; E-Value: 0
Query Start/End: Original strand, 13 - 889
Target Start/End: Original strand, 41713748 - 41714624
Alignment:
| Q |
13 |
atactatgattatggaaatctggcgacaaaaggaaacaaaaccccacttgtgaaaattccaaaaatctttgcaagtattgatttttcaagaaataaattt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713748 |
atactatgattatggaaatctggcgacaaaaggaaacaaaaccccacttgtgaaaattccaaaaatctttgcaagtattgatttttcaagaaataaattt |
41713847 |
T |
|
| Q |
113 |
gatggggtgattccagatgttattggagagcttcatgatctcaaagggcttaacctttcatataacaaactcactggtcacattccccaatccatgggaa |
212 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713848 |
gatggggagattccagatgttattggagagcttcatgatctcaaagggcttaacctttcatataacaaactcactggtcacattccccaatccatgggaa |
41713947 |
T |
|
| Q |
213 |
acttgataaacttggaatcattggatctctcgtcaaatatgctcactggttggattcctgtaaagttaaccaatttggactttcttgaagtcttggatct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41713948 |
acttgataaacttggaatcattggatctctcgtcaaatatgctcactggtcggattcctgtaaagttaaccaatttggactttcttgaagtcttggatct |
41714047 |
T |
|
| Q |
313 |
ttctaataaccatcttgtgggagaaatacctcaaggaaagcagttccatacatttacaaatgattcctatgaagaaaacttggggttatgtggatttccc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41714048 |
ttctaataaccatcttgtgggagaaatacctcaaggaaagcagttcaatacatttacaaatgattcctatgaaggaaacttggggttatgtggatttccc |
41714147 |
T |
|
| Q |
413 |
ttgtccaagaattgtggaaagcagtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcatt |
512 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41714148 |
ttgtccaagaattgtggaaagcagtgcagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcatt |
41714247 |
T |
|
| Q |
513 |
ggatattacatgtttttgatcggaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggagga |
612 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41714248 |
gggtattacatgtttttgatcggaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggagga |
41714347 |
T |
|
| Q |
613 |
ccaatggttcaaccatgaatcgaatggtgcaaatgtcgtagttttagaattgtgattttttcctctactgtgttagttccttgtgtttaaaataagtttg |
712 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
41714348 |
ccaatggttcaaccatgaatcgaatggtgcaaatgtcgtagttttagaattgtgattttttcctctactttgttagttccttgtgtttaaaataagtttg |
41714447 |
T |
|
| Q |
713 |
atgtgagtgtgacaatcttgtcattcgtatttgatctagttttattttagttttagatttggactgtaaatggacatgtacggtgcttaatttgagttat |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41714448 |
atgtgagtgtgacaatcttgtcattcgtatttgatctagttttattttagttttagatttggactgtaaatggacatgtacggtgcttaatttgagttat |
41714547 |
T |
|
| Q |
813 |
tagatctagttgcagttggtcttatgagccctgtcaaaaacttgcaaaaccacctttgttgttagccaacatattct |
889 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41714548 |
tagatctagttgcagttggtcttatgagacctgtcaaaaacttgcaaaaccacctttgttgttagccaacatattct |
41714624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 64 - 430
Target Start/End: Original strand, 34240807 - 34241173
Alignment:
| Q |
64 |
gaaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgttattggagagcttcatgatctcaaagggctt |
163 |
Q |
| |
|
||||||||||| ||| |||| |||||||||||| |||||||| || ||| |||| | |||||| ||| ||| ||||| ||||| | |||||||||||| |
|
|
| T |
34240807 |
gaaaattccaacaatgtttgtaagtattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggagaacttcacgcactcaaagggctt |
34240906 |
T |
|
| Q |
164 |
aacctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatcattggatctctcgtcaaatatgctcactggtt |
263 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34240907 |
aacctttcacataacagactcactggtcctattcctcaatccatacaaaacttgacaaacttggaatcgttggatctctcgtcaaatatgctcactggta |
34241006 |
T |
|
| Q |
264 |
ggattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgggagaaatacctcaaggaaagcagttccatac |
363 |
Q |
| |
|
|||||||| | | |||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
34241007 |
tgattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacctcaaggaaagcaattcaatac |
34241106 |
T |
|
| Q |
364 |
atttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtccaagaattgtgga |
430 |
Q |
| |
|
||||||||||||||| ||| ||| |||||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
34241107 |
atttacaaatgattcttataaagggaacttggggttatgtggattacccttgtcaaagaaatgtgga |
34241173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 65 - 430
Target Start/End: Original strand, 34233035 - 34233400
Alignment:
| Q |
65 |
aaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgttattggagagcttcatgatctcaaagggctta |
164 |
Q |
| |
|
|||||||||| || ||||| |||||||||||| |||||||| || ||| |||| | |||||| ||| ||| ||||| ||||| | ||||||||||||| |
|
|
| T |
34233035 |
aaaattccaataaactttgtaagtattgatttctcaagaaacaagtttaatggaggaattccaaatgatataggagaacttcacgcactcaaagggctta |
34233134 |
T |
|
| Q |
165 |
acctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatcattggatctctcgtcaaatatgctcactggttg |
264 |
Q |
| |
|
|||||||| |||||| ||||||||||| ||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34233135 |
acctttcacataacagactcactggtcctattcctcaatccatacaaaacttgacaaacttggaatcgttggatctctcgtcaaatatgctcactggtat |
34233234 |
T |
|
| Q |
265 |
gattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgggagaaatacctcaaggaaagcagttccataca |
364 |
Q |
| |
|
|||||||| | | |||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
34233235 |
gattcctgcagaattaaccaatttgaacagtcttgaagtcttggatctttccaataaccatcttgtgggagaaatacctcaaggaaagcaattcaataca |
34233334 |
T |
|
| Q |
365 |
tttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtccaagaattgtgga |
430 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
34233335 |
tttacaaatgattcttataaagggaacttggggttatgtggattacccttgtcaaagaaatgtgga |
34233400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 33 - 430
Target Start/End: Complemental strand, 42128754 - 42128357
Alignment:
| Q |
33 |
tggcgacaaaaggaaacaaaaccccacttgtgaaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgt |
132 |
Q |
| |
|
||||||||||||| ||||||| || | |||||||||||||| ||||||| || ||||||||| |||||||| |||||||| || | |||||| ||| |
|
|
| T |
42128754 |
tggcgacaaaagggaacaaaaggacattggtgaaaattccaaatatctttgtaattattgatttgtcaagaaacaaatttgaaggagatattccaaatga |
42128655 |
T |
|
| Q |
133 |
tattggagagcttcatgatctcaaagggcttaacctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatca |
232 |
Q |
| |
|
| |||| |||||||||| || | ||| || |||||||| |||||||||||| ||| | ||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
42128654 |
ttttggtgagcttcatgcactaataggactcaacctttcccataacaaactcattggccctattccaaaatccatgggaaacttgacaaacttggaatgg |
42128555 |
T |
|
| Q |
233 |
ttggatctctcgtcaaatatgctcactggttggattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgg |
332 |
Q |
| |
|
||||||||||| |||||| ||||||||| | |||||||| | | |||| |||||||| |||||||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
42128554 |
ttggatctctcatcaaatgtgctcactgatgtgattcctgcagaattaagcaatttgggttttcttgaagtcttagatctttcaaataaccatctagtgg |
42128455 |
T |
|
| Q |
333 |
gagaaatacctcaaggaaagcagttccatacatttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtccaagaattgtgga |
430 |
Q |
| |
|
||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42128454 |
gagaaatacctcaaggaccgcaattcaatacatttacaaatgattcctatgaaggaaacttggggttatgtggatttcccttgtcaaagaattgtgga |
42128357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 33 - 430
Target Start/End: Complemental strand, 42123360 - 42122963
Alignment:
| Q |
33 |
tggcgacaaaaggaaacaaaaccccacttgtgaaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgt |
132 |
Q |
| |
|
|||| |||||||||| ||||| |||| || ||||||||||||| |||| |||||||||| | |||||||| |||||||| || | ||||||| ||| |
|
|
| T |
42123360 |
tggcaacaaaaggaaccaaaatgacactcgttaaaattccaaaaaagtttgtaagtattgatatgtcaagaaacaaatttgaaggagagattccaaatgc |
42123261 |
T |
|
| Q |
133 |
tattggagagcttcatgatctcaaagggcttaacctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatca |
232 |
Q |
| |
|
||||||| |||| |||| |||| ||||||||||||||| |||||| ||||| ||||| ||||||||||| || ||| ||||| ||||||||||| |
|
|
| T |
42123260 |
tattggaaagctacatgcactcatagggcttaacctttcccataacagactcaatggtcctattccccaatcaattggatacttgtcaaacttggaatgg |
42123161 |
T |
|
| Q |
233 |
ttggatctctcgtcaaatatgctcactggttggattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgg |
332 |
Q |
| |
|
||||||||||| |||||||||||||||| | |||||||| | | |||||||||||| ||||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
42123160 |
ttggatctctcatcaaatatgctcactgatgtgattcctgcagaactaaccaatttgggctttcttgaagtcttagatatttcaaataaccatcttgtgg |
42123061 |
T |
|
| Q |
333 |
gagaaatacctcaaggaaagcagttccatacatttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtccaagaattgtgga |
430 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||| || || |||||| |
|
|
| T |
42123060 |
gagaaatacctcaaggaaagcagttcaatacatttacaaatgattcctatgaaggaaattcagggttatgtggattacccttgtcaaaaaaatgtgga |
42122963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 62 - 430
Target Start/End: Complemental strand, 42117583 - 42117215
Alignment:
| Q |
62 |
gtgaaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgttattggagagcttcatgatctcaaagggc |
161 |
Q |
| |
|
|||||||||||||| || |||| || ||||||||| |||| ||| |||||||| || | ||||||| ||| ||||||||| || |||| |||||||||| |
|
|
| T |
42117583 |
gtgaaaattccaaacatttttgtaattattgatttgtcaaaaaacaaatttgagggagagattccaaatgctattggagacctccatgcactcaaagggc |
42117484 |
T |
|
| Q |
162 |
ttaacctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatcattggatctctcgtcaaatatgctcactgg |
261 |
Q |
| |
|
|||||||||| |||||| |||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
42117483 |
ttaacctttcccataacagactcaccggtcatattcccaaatccatgggaaacttgtcaaacttggaatcattggatctctcgtcaaatatgcttaccgg |
42117384 |
T |
|
| Q |
262 |
ttggattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgggagaaatacctcaaggaaagcagttccat |
361 |
Q |
| |
|
| ||| |||| | | ||||||||||| ||||||||| |||||||| ||||||| ||||||||||| |||||| |||||||||||| ||| ||| || |
|
|
| T |
42117383 |
tatgatccctgcagaattaaccaatttagactttcttcaagtcttgaatctttccaataaccatctagtgggaaaaatacctcaagagccgcacttcgat |
42117284 |
T |
|
| Q |
362 |
acatttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtccaagaattgtgga |
430 |
Q |
| |
|
|||||| ||||||||||||| ||| ||||||||| |||||||||||||| ||||| |||| ||||||| |
|
|
| T |
42117283 |
acatttccaaatgattcctacaaaggaaacttgggtttatgtggatttccgttgtcaaagatttgtgga |
42117215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 433 - 633
Target Start/End: Complemental strand, 42117174 - 42116974
Alignment:
| Q |
433 |
gcagtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgat |
532 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
42117174 |
gcagtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattttatgtttttaat |
42117075 |
T |
|
| Q |
533 |
cggaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaat |
632 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||||||||||||| ||||| | | |||||||||||||| |||| | ||||| ||||||||||| |
|
|
| T |
42117074 |
tggaaagcctagatggattgtgatgatatttggtggtcagcctaagagaagagtgaaaagaagaacaagaatgagaaggaaccatggtacaaccatgaat |
42116975 |
T |
|
| Q |
633 |
c |
633 |
Q |
| |
|
| |
|
|
| T |
42116974 |
c |
42116974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 435 - 633
Target Start/End: Complemental strand, 42122923 - 42122725
Alignment:
| Q |
435 |
agtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcg |
534 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || | |
|
|
| T |
42122923 |
agtgaagagaaatttagatttggatggaaaccagtggcgattggatatggatgtggatttgtgattggaatatgcattggatattatatgtttttaattg |
42122824 |
T |
|
| Q |
535 |
gaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
42122823 |
gaaagcctagatggcttgtcatgatatttggtggtccgcctaagagaagagtgacaaggagaacaagagtgaggagggcacatggttcaaccatgaatc |
42122725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 435 - 633
Target Start/End: Complemental strand, 42128318 - 42128120
Alignment:
| Q |
435 |
agtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcg |
534 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | |
|
|
| T |
42128318 |
agtgaagagaaatttagatttggatggaaaccagtggcgattggatatggatgtggatttgtgattggaataggcattggatattatatgtttttaattg |
42128219 |
T |
|
| Q |
535 |
gaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc |
633 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||| | |||||||||||||||||| |
|
|
| T |
42128218 |
aaaagtctagatggcttgttatgatatttggtggtcagcctaagagaagagtgacaaggagaacaagagtgaggagggcacatggttcaaccatgaatc |
42128120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 435 - 730
Target Start/End: Original strand, 34241213 - 34241513
Alignment:
| Q |
435 |
agtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcg |
534 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||| || | |
|
|
| T |
34241213 |
agtgaagagaaatttggctttggatggaaaccagtggcaattggttatggatgtggatttgtgtttggaataggccttggatattatatgtttttaattg |
34241312 |
T |
|
| Q |
535 |
gaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatcg |
634 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| |||||||| | ||||||| | ||||||| |||||||||||| |
|
|
| T |
34241313 |
gaaagcctagatggtttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacataagtgaggagaaacaatggtccaaccatgaatca |
34241412 |
T |
|
| Q |
635 |
aatggtgcaaatgtcgtagttttagaattgtgattttttcctcta--ctgtgttagttcct--tgtgtttaaaataag-tttgatgtgagtgtgacaatc |
729 |
Q |
| |
|
|||||||||||||| |||||||| ||| || || ||| ||||| |||||||||| | | ||||||||||||| |||||||||||| |||||||| |
|
|
| T |
34241413 |
gatggtgcaaatgtcatagttttattattctggttattttctctattgtgtgttagtttttactctgtttaaaataagttttgatgtgagtttgacaatc |
34241512 |
T |
|
| Q |
730 |
t |
730 |
Q |
| |
|
| |
|
|
| T |
34241513 |
t |
34241513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 435 - 658
Target Start/End: Original strand, 34233440 - 34233663
Alignment:
| Q |
435 |
agtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcg |
534 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||| || | |
|
|
| T |
34233440 |
agtgaagagaaatttggctttggatggaaaccagtggcaattggttatggatgtggatttgtgtttggaataggccttggatattatatgtttttaattg |
34233539 |
T |
|
| Q |
535 |
gaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatcg |
634 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||| |||||||||| ||||| |||||||| | ||||||| | ||||||| |||||||||||| |
|
|
| T |
34233540 |
gaaagcctagatggtttgtgatgatatttggtggtcatcctaagagaagagtgaataggagaacataagtgaggagaaacaatggtccaaccatgaatca |
34233639 |
T |
|
| Q |
635 |
aatggtgcaaatgtcgtagtttta |
658 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
34233640 |
gatggtgcaaatgtcatagtttta |
34233663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 129 - 428
Target Start/End: Original strand, 41572325 - 41572624
Alignment:
| Q |
129 |
atgttattggagagcttcatgatctcaaagggcttaacctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttgga |
228 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| |||||| |||||| |||| ||||| |||||| | ||||||||| |||| |||| |
|
|
| T |
41572325 |
atgttattggggagcttcactcactcaaagggcttaacctttcccataacagactcaccggtcctattcctcaatccgtaggaaacttgtcaaacatgga |
41572424 |
T |
|
| Q |
229 |
atcattggatctctcgtcaaatatgctcactggttggattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatctt |
328 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| |||||| | | |||| |||| || || | ||| ||| ||| |||||||| |||||||||| |
|
|
| T |
41572425 |
atcattggatctttcgtcaaatatactcactggtgtaattccttcagaattaatcaatctgaacggtattggagtattgaatctttctcataaccatcta |
41572524 |
T |
|
| Q |
329 |
gtgggagaaatacctcaaggaaagcagttccatacatttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtccaagaattgtg |
428 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||| | ||||| || ||||||| ||||||||| ||||| |||||||||||||| ||||| |||| |
|
|
| T |
41572525 |
gtgggagaaatacctcaaggaaaacagttcaatacattttccaatgactcatatgaaggaaacttgggattatgcggatttcccttgtcaaagaaatgtg |
41572624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 129 - 428
Target Start/End: Original strand, 41617964 - 41618263
Alignment:
| Q |
129 |
atgttattggagagcttcatgatctcaaagggcttaacctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttgga |
228 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||| |||||| |||||| |||| ||||| |||||| | ||||||||| |||| |||| |
|
|
| T |
41617964 |
atgttattggggagcttcactcactcaaagggcttaacctttcccataacagactcaccggtcctattcctcaatccgtaggaaacttgtcaaacatgga |
41618063 |
T |
|
| Q |
229 |
atcattggatctctcgtcaaatatgctcactggttggattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatctt |
328 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| |||||| | | |||| |||| || || | ||| ||| ||| |||||||| |||||||||| |
|
|
| T |
41618064 |
atcattggatctttcgtcaaatatactcactggtgtaattccttcagaattaatcaatctgaacggtattggagtattgaatctttctcataaccatcta |
41618163 |
T |
|
| Q |
329 |
gtgggagaaatacctcaaggaaagcagttccatacatttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtccaagaattgtg |
428 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||| | ||||| || ||||||| ||||||||| ||||| |||||||||||||| ||||| |||| |
|
|
| T |
41618164 |
gtgggagaaatacctcaaggaaaacagttcaatacattttccaatgactcatatgaaggaaacttgggattatgcggatttcccttgtcaaagaaatgtg |
41618263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 435 - 632
Target Start/End: Original strand, 41618305 - 41618502
Alignment:
| Q |
435 |
agtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcg |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | || |||||||||||| |||||| || |||| || || | |
|
|
| T |
41618305 |
agtgaagagaaatttggatttggatggaaaccagtggctattggatatggatgtggaatggttattggaataggccttggatgttttgtgttgttaattg |
41618404 |
T |
|
| Q |
535 |
gaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaat |
632 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||| |||||| || ||||||| |||| |||||| ||||||| || |||| |||||||||||| |
|
|
| T |
41618405 |
gaaagcctagatggcttgtgatgatggttggaggtcaacctaagcaaagagtgacaaggagcacaagagtgaggagaactcatggctcaaccatgaat |
41618502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 67 - 383
Target Start/End: Complemental strand, 41444191 - 41443875
Alignment:
| Q |
67 |
aattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgttattggagagcttcatgatctcaaagggcttaac |
166 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||| |||| |||||||| || | |||||| |||||||||| |||||||||| ||| ||| || ||| |
|
|
| T |
41444191 |
aattcctacaatctttgtaagtattgatttttcaggaaacaaatttgaaggagacattccaaatgttattggtgagcttcatgcaatcataggactcaac |
41444092 |
T |
|
| Q |
167 |
ctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatcattggatctctcgtcaaatatgctcactggttgga |
266 |
Q |
| |
|
||||| | || ||||| |||||| ||||| |||||| | ||||| ||||||||| | |||||| |||||||||| |||||||||||||||||| ||| |
|
|
| T |
41444091 |
ctttcccacaataaacttactggtgcgattcctcaatcctttggaaatttgataaacatcgaatcaatggatctctcctcaaatatgctcactggtagga |
41443992 |
T |
|
| Q |
267 |
ttcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgggagaaatacctcaaggaaagcagttccatacatt |
366 |
Q |
| |
|
||||| | ||||||||||||| ||| ||||| ||| ||| || | ||| | |||||||||| |||| |||| || |||| ||||||| |||| || |
|
|
| T |
41443991 |
ttcctacagagttaaccaatttaaactatcttgcagttttgaatatctctcaaaaccatcttgaaggagcaatagctagaggagagcagtttgatacctt |
41443892 |
T |
|
| Q |
367 |
tacaaatgattcctatg |
383 |
Q |
| |
|
| | ||||||||||||| |
|
|
| T |
41443891 |
ttccaatgattcctatg |
41443875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 435 - 690
Target Start/End: Original strand, 41572666 - 41572921
Alignment:
| Q |
435 |
agtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcg |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | || |||||||||||| |||||| || |||| || | || |
|
|
| T |
41572666 |
agtgaagagaaatttggatttggatggaaaccagtggctattggatatggatgtggaatggttattggaataggccttggatgttttgtgttgttaaccg |
41572765 |
T |
|
| Q |
535 |
gaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatcg |
634 |
Q |
| |
|
||||||||||||||||||| ||||| |||| ||||| |||||| || ||| ||| |||| | |||| ||||||| | |||| |||||||||||| |
|
|
| T |
41572766 |
gaaagcctagatggcttgtgatgatggttggaggtcaacctaagcaaagagttacaaggaggataagagtgaggagaattcatggctcaaccatgaatta |
41572865 |
T |
|
| Q |
635 |
aatggtgcaaatgtcgtagttttagaattgtgattttttcctctactgtgttagtt |
690 |
Q |
| |
|
|||||||| |||| |||||||| || ||||| ||| |||| ||||||||||| |
|
|
| T |
41572866 |
gatggtgcagatgtgatagttttattgttctgattattttctcttctgtgttagtt |
41572921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 450 - 490
Target Start/End: Original strand, 37402325 - 37402365
Alignment:
| Q |
450 |
ggatttggatggaaagcagtggcaattggatatggatgtgg |
490 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
37402325 |
ggatttggctggaaagctgtggcaattggatatggatgtgg |
37402365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 37531933 - 37531893
Alignment:
| Q |
450 |
ggatttggatggaaagcagtggcaattggatatggatgtgg |
490 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
37531933 |
ggatttggctggaaagctgtggcaattggatatggatgtgg |
37531893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 37593037 - 37592997
Alignment:
| Q |
450 |
ggatttggatggaaagcagtggcaattggatatggatgtgg |
490 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
37593037 |
ggatttggctggaaagctgtggcaattggatatggatgtgg |
37592997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 450 - 490
Target Start/End: Complemental strand, 37695428 - 37695388
Alignment:
| Q |
450 |
ggatttggatggaaagcagtggcaattggatatggatgtgg |
490 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
37695428 |
ggatttggctggaaagctgtggcaattggatatggatgtgg |
37695388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 437 - 492
Target Start/End: Original strand, 37383640 - 37383695
Alignment:
| Q |
437 |
tgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggat |
492 |
Q |
| |
|
||||||| ||| ||||||||| ||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
37383640 |
tgaagaggaatctggatttggctggaaagcagtggtaataggatatgcatgtggat |
37383695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 8e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 40 - 430
Target Start/End: Complemental strand, 11118016 - 11117626
Alignment:
| Q |
40 |
aaaaggaaacaaaaccccacttgtgaaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgttattgga |
139 |
Q |
| |
|
|||||| ||||||| |||| ||||||||||||| || || | |||||||||||| |||||||| |||||||| || | |||| || ||| ||||||| |
|
|
| T |
11118016 |
aaaagggaacaaaatgacactggtgaaaattccaataaagttagtaagtattgatttgtcaagaaacaaatttgaaggagagattacaaatgctattgga |
11117917 |
T |
|
| Q |
140 |
gagcttcatgatctcaaagggcttaacctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatcattggatc |
239 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| ||||| ||| |||||||| |||||| | ||||| ||||||||| | |||||||||| ||||||| |
|
|
| T |
11117916 |
gagcttcatgcactcaaagggcttaatctttcccgtaacagacttactggtcatattcccaactccataggaaacttggcatacttggaatctttggatc |
11117817 |
T |
|
| Q |
240 |
tctcgtcaaatatgctcactggttggattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgggagaaat |
339 |
Q |
| |
|
| || ||||||||| | || || |||||||| | | ||||||||||||| ||||||||||||||| ||| |||| ||||||||||| ||||||||||| |
|
|
| T |
11117816 |
tttcatcaaatatgttaaccagtgtgattcctgcagaattaaccaatttgggctttcttgaagtcttagatatttcaaataaccatctagtgggagaaat |
11117717 |
T |
|
| Q |
340 |
acctcaaggaaagcagttccatacatttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtccaagaattgtgga |
430 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
11117716 |
acctcaaggaaagcaattcaatacatttacaaatgattcctatgaaggaaattcagggttatgtggattacccttgtcaaagaaatgtgga |
11117626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 437 - 633
Target Start/End: Complemental strand, 11117578 - 11117382
Alignment:
| Q |
437 |
tgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcgga |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||| || ||| |
|
|
| T |
11117578 |
tgaagagaaatttggatttggatggaaagcagtggcaattggatatgcatgtggatttgtgattggaataagcattggatattatatgtttttaattgga |
11117479 |
T |
|
| Q |
537 |
aagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| | ||||||||| |||||||| |
|
|
| T |
11117478 |
aagcctagatggcttgtcatgatatttggtggtcagcctaagagaagagtgacaaggagaacaagagtgaggagcgcacatggttcaaacatgaatc |
11117382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 8e-79; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 8e-79
Query Start/End: Original strand, 65 - 430
Target Start/End: Complemental strand, 12248287 - 12247922
Alignment:
| Q |
65 |
aaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgttattggagagcttcatgatctcaaagggctta |
164 |
Q |
| |
|
||||||||||| ||||| | || ||||||||| |||||||| |||||||| || | ||||||| ||||||||| |||||||| | || | |||||||| |
|
|
| T |
12248287 |
aaaattccaaacatcttagtaattattgatttgtcaagaaacaaatttgaaggagagattccaaatgttattgatgagcttcaagcacttatagggctta |
12248188 |
T |
|
| Q |
165 |
acctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatcattggatctctcgtcaaatatgctcactggttg |
264 |
Q |
| |
|
||||||| |||||| ||||| ||||| |||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| | |
|
|
| T |
12248187 |
acctttcccataacagactcattggtcctattcccaaatccatgggaaacttgacaaacttggaatggctggatctctcatcaaatatgctcactgatgt |
12248088 |
T |
|
| Q |
265 |
gattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgggagaaatacctcaaggaaagcagttccataca |
364 |
Q |
| |
|
|||||| | ||| ||||||||||||| |||||||| ||| || || |||| ||||||||||| |||||||||||||||| |||||| |||||| | ||| |
|
|
| T |
12248087 |
gattccagcaaaattaaccaatttgggctttcttgcagttttagacttttccaataaccatctagtgggagaaatacctcgaggaaaacagttcgagaca |
12247988 |
T |
|
| Q |
365 |
tttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtccaagaattgtgga |
430 |
Q |
| |
|
||| |||||||||| |||| || |||||||| ||||||||||||||||||||| ||||| |||||| |
|
|
| T |
12247987 |
ttttcaaatgattcatatgtaggaaacttggagttatgtggatttcccttgtcaaagaagtgtgga |
12247922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 65 - 423
Target Start/End: Original strand, 11994642 - 11995001
Alignment:
| Q |
65 |
aaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgttattggagagcttcatgatctcaaagggctta |
164 |
Q |
| |
|
||||||||||| ||||| | || ||||||||| |||||||| |||||||| || | ||||||| ||||||||| |||||||| | || | |||||||| |
|
|
| T |
11994642 |
aaaattccaaacatcttagtaattattgatttgtcaagaaacaaatttgaaggagagattccaaatgttattgatgagcttcaagcacttatagggctta |
11994741 |
T |
|
| Q |
165 |
acctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatcattggatctctcgtcaaatatgctcactggttg |
264 |
Q |
| |
|
||||||| |||||| ||||| ||||| |||||| |||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| | |
|
|
| T |
11994742 |
acctttcccataacagactcattggtcctattcccaaatccatgggaaacttgacaaacttggaatggctggatctctcatcaaatatgctcactgatgt |
11994841 |
T |
|
| Q |
265 |
gattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgggagaaatacctcaaggaaagcagttcc-atac |
363 |
Q |
| |
|
|||||| | ||| ||||||||||||| |||||||| ||| || || |||| ||||||||||| |||||||||||||||| |||||| ||||||| | || |
|
|
| T |
11994842 |
gattccagcaaaattaaccaatttgggctttcttgcagttttagacttttccaataaccatctagtgggagaaatacctcgaggaaaacagttccgagac |
11994941 |
T |
|
| Q |
364 |
atttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtccaagaa |
423 |
Q |
| |
|
|||| |||||||||| |||| || |||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
11994942 |
attttcaaatgattcatatgtaggaaacttggagttatgtgaatttcccttgtcaaagaa |
11995001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 435 - 633
Target Start/End: Original strand, 11995051 - 11995249
Alignment:
| Q |
435 |
agtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcg |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| || | |
|
|
| T |
11995051 |
agtgaagagaaatttggatttggatggaaaccagtggcaattggatatggatgtggatttgtgattggaataggcctcggatattgtatgtttttaattg |
11995150 |
T |
|
| Q |
535 |
gaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc |
633 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| | ||||||||||| |||| |||| | ||||| |||||||||||| |
|
|
| T |
11995151 |
gaaagcctagatggcttgtgatgatatttggtggtcagcctaaaagaagagtgaaaaggagaacaagagtgagtaggaaccatggtgcaaccatgaatc |
11995249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 443 - 633
Target Start/End: Complemental strand, 12247871 - 12247681
Alignment:
| Q |
443 |
gaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcggaaagcct |
542 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||| || ||||||||| |
|
|
| T |
12247871 |
gaaatttggatttggatggaaaccggtggcaattggatatggatgtggatttgtgattggaataggcctcggatattgtatgtttttaattggaaagcct |
12247772 |
T |
|
| Q |
543 |
agatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc |
633 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||| ||||| | ||||||||||| |||| |||| | ||||| |||||||||||| |
|
|
| T |
12247771 |
agatggcttgtgatgatatttggtggtcagcctaaaagaagagtgaaaaggagaacaagagtgagtaggaaccatggtgcaaccatgaatc |
12247681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 475 - 588
Target Start/End: Original strand, 32682381 - 32682494
Alignment:
| Q |
475 |
ttggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcggaaagcctagatggcttgtcatgatatttggtggtcagcc |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||||||| |||||| |||||||||| || |
|
|
| T |
32682381 |
ttggatatggatgtggatttgtgattggaataggcattggatactttatgtttttaattggaaagcctagatggcttgtgatgataattggtggtcatcc |
32682480 |
T |
|
| Q |
575 |
taagagaatagtga |
588 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
32682481 |
taagagaagagtga |
32682494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 437 - 559
Target Start/End: Original strand, 9423384 - 9423506
Alignment:
| Q |
437 |
tgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcgga |
536 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| |||||| |||| |||||| || ||| | || || ||| |
|
|
| T |
9423384 |
tgaagagaaatttggatttggatggaaatcagtggcaattggatatggatgtggaatggtgcttggaaaaggccttggatgttgtatgctgttaattgga |
9423483 |
T |
|
| Q |
537 |
aagcctagatggcttgtcatgat |
559 |
Q |
| |
|
||||||||||||| ||| ||||| |
|
|
| T |
9423484 |
aagcctagatggcctgtgatgat |
9423506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 32682150 - 32682311
Alignment:
| Q |
57 |
cacttgtgaaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgttattggagagcttcatgatc---- |
152 |
Q |
| |
|
|||| ||||||||||||| || ||||| |||||||||||| |||||||| | |||||| || | ||||||| ||| |||||| |||||||||| | |
|
|
| T |
32682150 |
cactagtgaaaattccaagaaactttgtaagtattgatttgtcaagaaacagatttgaaggagagattccaaatgctattggggagcttcatgcactcag |
32682249 |
T |
|
| Q |
153 |
--tcaaagggcttaacctttcatataacaaactcactggtcacattccccaatccatgggaa |
212 |
Q |
| |
|
||| ||||||||||||||| |||||| |||||| | ||| ||||||||||||||||||| |
|
|
| T |
32682250 |
aatcagagggcttaacctttcccataacagactcaccgatcatattccccaatccatgggaa |
32682311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 226 - 255
Target Start/End: Original strand, 32682308 - 32682337
Alignment:
| Q |
226 |
ggaatcattggatctctcgtcaaatatgct |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32682308 |
ggaatcattggatctctcgtcaaatatgct |
32682337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 2e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 62 - 422
Target Start/End: Original strand, 25523273 - 25523633
Alignment:
| Q |
62 |
gtgaaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgttattggagagcttcatgatctcaaagggc |
161 |
Q |
| |
|
||||||||||||| || |||| | |||||||||||||||||| |||||||| || | ||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
25523273 |
gtgaaaattccaataaagtttgtatctattgatttttcaagaaacaaatttgaaggagagattccaaatgctattggagagcttcatgcactcaaagggc |
25523372 |
T |
|
| Q |
162 |
ttaacctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatcattggatctctcgtcaaatatgctcactgg |
261 |
Q |
| |
|
|||||||||| | |||| ||| || ||||| |||||| ||||||| |||||||||| | |||||||||| ||||||| || |||||| | || || |
|
|
| T |
25523373 |
ttaacctttcccacaacagacttaccggtcatattcccaaatccataggaaacttgacatacttggaatctctggatctttccctgaatatgttaaccgg |
25523472 |
T |
|
| Q |
262 |
ttggattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgggagaaatacctcaaggaaagcagttccat |
361 |
Q |
| |
|
| |||||||| | ||||||||||| |||||||||||||| || ||||||| ||||||||| | ||||||||||||||| ||||||||| ||| | |
|
|
| T |
25523473 |
tgtgattcctgcggaattaaccaatttaaactttcttgaagtcatgaatctttccaataaccatttggtgggagaaatacctagaggaaagcaattcaac |
25523572 |
T |
|
| Q |
362 |
acatttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtccaaga |
422 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
25523573 |
acatttacaaatgattcctatgaaggaaacttggggttatgtggatttcccttgtcaaaga |
25523633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 435 - 633
Target Start/End: Original strand, 25523684 - 25523882
Alignment:
| Q |
435 |
agtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgatcg |
534 |
Q |
| |
|
|||||||||||||||||||||||||||| | | |||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | | |
|
|
| T |
25523684 |
agtgaagagaaatttggatttggatggataccggtggtaattggatatggatgtggatttctgattggaataggcattggatattgtatgtttttagttg |
25523783 |
T |
|
| Q |
535 |
gaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc |
633 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||||| |||| | || |||||||||||||||| ||||| || ||||||||| |
|
|
| T |
25523784 |
gaaagcctagatggcttgtgatgatatttggcggtcagcctaagagaaaggtgaaaaaaaggacaagaatgaggaggaatcatggtacagccatgaatc |
25523882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 57 - 253
Target Start/End: Complemental strand, 24140686 - 24140490
Alignment:
| Q |
57 |
cacttgtgaaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgttattggagagcttcatgatctcaa |
156 |
Q |
| |
|
|||| |||||||||||||||| |||| |||||| ||| | |||||||| |||||||| || | ||||||| ||| ||| ||||||||||||| ||||| |
|
|
| T |
24140686 |
cactggtgaaaattccaaaaaagtttgtaagtatcgatatgtcaagaaacaaatttgaaggagagattccaaatgctatcggagagcttcatgcactcaa |
24140587 |
T |
|
| Q |
157 |
agggcttaacctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatcattggatctctcgtcaaatatg |
253 |
Q |
| |
|
|||| |||||||||| |||||| ||| |||||||| |||||||||||||| ||||| |||| | |||||||||| ||| |||| || ||||||||| |
|
|
| T |
24140586 |
agggattaacctttcccataacagacttactggtcatattccccaatccatcggaaagttgacatacttggaatctttgaatctttcatcaaatatg |
24140490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 693 - 751
Target Start/End: Original strand, 25523940 - 25523998
Alignment:
| Q |
693 |
ttgtgtttaaaataagtttgatgtgagtgtgacaatcttgtcattcgtatttgatctag |
751 |
Q |
| |
|
|||||||||||||||| ||||||| |||| |||||||| |||| || |||||||||||| |
|
|
| T |
25523940 |
ttgtgtttaaaataagcttgatgttagtgcgacaatctagtcactcttatttgatctag |
25523998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 5e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 5e-71
Query Start/End: Original strand, 33 - 417
Target Start/End: Complemental strand, 8522983 - 8522599
Alignment:
| Q |
33 |
tggcgacaaaaggaaacaaaaccccacttgtgaaaattccaaaaatctttgcaagtattgatttttcaagaaataaatttgatggggtgattccagatgt |
132 |
Q |
| |
|
||||||||||||| ||||||| ||| |||||||||||||| | ||||| || ||||||||| |||||||| |||||||| || | ||||||| | | |
|
|
| T |
8522983 |
tggcgacaaaagggaacaaaatgaaactagtgaaaattccaaacaactttgtaattattgatttgtcaagaaacaaatttgaaggcgagattccaaagat |
8522884 |
T |
|
| Q |
133 |
tattggagagcttcatgatctcaaagggcttaacctttcatataacaaactcactggtcacattccccaatccatgggaaacttgataaacttggaatca |
232 |
Q |
| |
|
|||||| |||||||||| ||| ||||||||||||||| |||||| ||| || ||||| |||||| ||||||| |||||||||| | |||||||||| |
|
|
| T |
8522883 |
tattggtgagcttcatgcaatcatagggcttaacctttcccataacagacttacaggtcatattcccaaatccataggaaacttgacatacttggaatct |
8522784 |
T |
|
| Q |
233 |
ttggatctctcgtcaaatatgctcactggttggattcctgtaaagttaaccaatttggactttcttgaagtcttggatctttctaataaccatcttgtgg |
332 |
Q |
| |
|
|||||||| || ||||||||| | || | | ||||||| | | ||||||||| | || ||||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
8522783 |
ttggatctttcctcaaatatgttaaccgatgtgattcctttggaattaaccaatcttaacagtcttgaagtcttggatctttccaataatcgtcttgtgg |
8522684 |
T |
|
| Q |
333 |
gagaaatacctcaaggaaagcagttccatacatttacaaatgattcctatgaagaaaacttggggttatgtggatttcccttgtc |
417 |
Q |
| |
|
||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
8522683 |
gagaaatacctcagggaaagcaattcaatacatttacaaatgattcttatgaaggaaacttggatttatgtggattacccttgtc |
8522599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 433 - 612
Target Start/End: Complemental strand, 8522548 - 8522369
Alignment:
| Q |
433 |
gcagtgaagagaaatttggatttggatggaaagcagtggcaattggatatggatgtggatttgtgattggaataggcattggatattacatgtttttgat |
532 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
8522548 |
gcagtgaagagaagtttgaatttggatggaaaccagtggcaattggatacggatgtggatttgtgattggaataggcattggatattatatgtttttaat |
8522449 |
T |
|
| Q |
533 |
cggaaagcctagatggcttgtcatgatatttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggagga |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | | || |||||||||| ||||| |
|
|
| T |
8522448 |
tggaaagcctagatggcttgtcatgatatttggtggtcagcctaagaggagagtgaaaagaaggacaagaatgacgagga |
8522369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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