View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15685_low_3 (Length: 418)
Name: NF15685_low_3
Description: NF15685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15685_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 403
Target Start/End: Original strand, 2764510 - 2764926
Alignment:
| Q |
16 |
tgaatacgatatgtgggtgtaacaatacttggtcaggctattcttacctcatggacgacaaacttcgactta-----------------gaaacctaagg |
98 |
Q |
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| T |
2764510 |
tgaatacgacatgtgggtgtaataatacttggtcaggctattcttacctcatggacggcaaacttcgacttatagggttctttctcctagaaacctaagg |
2764609 |
T |
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| Q |
99 |
attaacgcaaaagaaaaagttggataactgtatgattttttattgatgtcaactccccaataaagataactatatccacctttcattgaggtaaataaaa |
198 |
Q |
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| T |
2764610 |
attaacgcaaaagaaaaaggtggataactgtatgattttttattgatgtcaactccccaatatagataactatatccacctttcattgaggtaaataaaa |
2764709 |
T |
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| Q |
199 |
atatgtgccaaacttatggctttatttgcgagacatgagaggaaaggagaggaggattt------aagaaaaagaaaagagcaagtggaagaaataaata |
292 |
Q |
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| T |
2764710 |
atatgtgccaaacttatggctttatttgcgagacatgagaggaaaggagaggaggacttgagaaaaagaaaaagaaaagagcaagtggaagaaataaata |
2764809 |
T |
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| Q |
293 |
acactatcatgattagga-----agttggagtctttatgtattatgtgttggatatttttatttgagtaaccgttgttta-nnnnnnnaattaattgtgg |
386 |
Q |
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| T |
2764810 |
acactatcatgattaggactgctatgtggagtctttatgtattatgtgttggatatttttatttcagtaactgttgtttattttttttaattaattgtga |
2764909 |
T |
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| Q |
387 |
tagttattggaagtttt |
403 |
Q |
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| T |
2764910 |
tagttattggaagtttt |
2764926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 17 - 403
Target Start/End: Original strand, 2801663 - 2802075
Alignment:
| Q |
17 |
gaatacgatatgtgggtgtaacaatacttggtcaggctattcttacctcatggacgacaaacttcgacttaga-----------------aacctaagga |
99 |
Q |
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| T |
2801663 |
gaattcgatttgtgggtgtaacaattcttggtcaagctatttttacctcatgggcgacaaacttcgacttacatggttctttctcctataaacctaagga |
2801762 |
T |
|
| Q |
100 |
ttaacgcaaaagaaaaagttggataactgtatga-ttttttattgatgtcaactccccaataaagataactatatccacctttcattga--ggtaaataa |
196 |
Q |
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| T |
2801763 |
ttaacacaaaagaaaaaagttgataactgtatgaattttttattgatgtcaactccccaatatagataactatatccaccttttattgatgggtaaataa |
2801862 |
T |
|
| Q |
197 |
aaatatgtgccaaacttatggctttatttgcgagacatgagaggaaaggagaggaggatttaagaaaaagaaaagagcaagtggaagaaataaataacac |
296 |
Q |
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| T |
2801863 |
aaatatgtgccaaactttaggctttatttgcgggacaagagaggaaaggaggggaggactttggaaaaagaaaagaacaagtgaaagaaaaaaataacac |
2801962 |
T |
|
| Q |
297 |
tatcatgattagga------agttggagtctttatgtattatgtgttggatatttttatttgagtaaccgttgtttannnnnnnaattaattgtggtagt |
390 |
Q |
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| T |
2801963 |
tatcatgcttaggactgctgatgtggagtctttatgtattatgtgttggatatttttattttagtaacttttttttattttttaaattaattgtggtagt |
2802062 |
T |
|
| Q |
391 |
tattggaagtttt |
403 |
Q |
| |
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||| ||||||||| |
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| T |
2802063 |
tatcggaagtttt |
2802075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 11634263 - 11634307
Alignment:
| Q |
314 |
tggagtctttatgtattatgtgttggatatttttatttgagtaac |
358 |
Q |
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| T |
11634263 |
tggagtcattatgtattatgtgttggttatttttattttagtaac |
11634307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 403
Target Start/End: Complemental strand, 8978333 - 8978305
Alignment:
| Q |
375 |
aattaattgtggtagttattggaagtttt |
403 |
Q |
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| T |
8978333 |
aattaattgtggtagttattggaagtttt |
8978305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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