View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15685_low_5 (Length: 342)
Name: NF15685_low_5
Description: NF15685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15685_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 339
Target Start/End: Original strand, 45671511 - 45671848
Alignment:
| Q |
6 |
gtccaagaatatgcaagcttacaaagaaggtaaattgacatgctatattttctttaatttttatggctaaaaaatctgcatttgaccacatgttacacat |
105 |
Q |
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| T |
45671511 |
gtccaaaaatatgcaagcttacaaagaaggtaaattgacatgctatattttctttaatttttatggctaaaaaatctgcatttgaccacatgttacacat |
45671610 |
T |
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| Q |
106 |
ttgtaagctcgtggacaatgcagtgtctggcacataaatgagcaaccagaacatatttgagttaatcaattggctg----aagttagtatttcttaccct |
201 |
Q |
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| T |
45671611 |
ttgtaagctcgtggacaatgcagtgtctggcacataaatgagcaaccagaacagatttgagttaatcaattggctgaaacaagttagtatttcttacccg |
45671710 |
T |
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| Q |
202 |
ttgaacgagtcgcagggcagcaaaccataaacctaaaaaagcattgtgccatgcagtagcattgactgcctgtaaagccttgaccaagtcagtaagaagt |
301 |
Q |
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| T |
45671711 |
ttgaacgagccgcagggcagcaaaccataaacctaaaaaagcattgtgccatgcagtagcattgactgcctgtaaagccttgaccaagtcagtaagaagt |
45671810 |
T |
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| Q |
302 |
tcaacagcactggcagccatgacatgatgatgtccatc |
339 |
Q |
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| T |
45671811 |
tcaacagcactggcagccatgacatgatgatgaccatc |
45671848 |
T |
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