View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15685_low_8 (Length: 239)
Name: NF15685_low_8
Description: NF15685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15685_low_8 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 38204524 - 38204626
Alignment:
| Q |
137 |
ttgtttgtaaacgagtagaagagcattcaagtagtgatggattggttgtagaagaagataatcttaaacaatttaattaaaatttaaaagaaaatgttaa |
236 |
Q |
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| T |
38204524 |
ttgtttgtaaacgagtagaagagcattcaagtagtgatggattggttgtagaagaaaataatcttaaacaatttaattaaaatttaaagggaaatgttaa |
38204623 |
T |
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| Q |
237 |
ctc |
239 |
Q |
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||| |
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| T |
38204624 |
ctc |
38204626 |
T |
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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 38204433 - 38204531
Alignment:
| Q |
16 |
tcctcaagtaacaaaataaccgtgcattcaaattgcaattgttgacaagtgtaagaattaacataatcacgaaatagagcaataaataaatttgtttgt |
114 |
Q |
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|||| |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38204433 |
tcctaaagtaacaaaataaccatgcattcaaattgcaatcgtccacaagtgtaagaattaacataatcacaaaatagagcaataaataaatttgtttgt |
38204531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 20513205 - 20513172
Alignment:
| Q |
16 |
tcctcaagtaacaaaataaccgtgcattcaaatt |
49 |
Q |
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| T |
20513205 |
tcctcaagtaacaaaataaccgtgcattcaaatt |
20513172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 221
Target Start/End: Complemental strand, 15086119 - 15086035
Alignment:
| Q |
137 |
ttgtttgtaaacgagtagaagagcattcaagtagtgatggattggttgtagaagaagataatcttaaacaatttaattaaaattt |
221 |
Q |
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| T |
15086119 |
ttgtttgtaaatgagtagaagaaccttcgagtaatgatggattagccgtagatgaagataatcttgaacaatctaatgaaaattt |
15086035 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 29540885 - 29540818
Alignment:
| Q |
137 |
ttgtttgtaaacgagtagaagagcattcaagtagtgatggattggttgtagaagaagataatcttaaa |
204 |
Q |
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| T |
29540885 |
ttgtttgtaaacgagtagaagagccttctaataatgatggattgatcgtagaaaaagttaatattaaa |
29540818 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Original strand, 32670851 - 32670905
Alignment:
| Q |
60 |
acaagtgtaagaattaacataatcacgaaatagagcaataaataaatttgtttgt |
114 |
Q |
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| T |
32670851 |
acaagtcttagaattaacataatcacgaaaggggtcaataaataaatttgtttgt |
32670905 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 3126833 - 3126869
Alignment:
| Q |
185 |
tagaagaagataatcttaaacaatttaattaaaattt |
221 |
Q |
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| T |
3126833 |
tagaagaagttaatcttaaacaatttaataaaaattt |
3126869 |
T |
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