View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15686_high_3 (Length: 479)

Name: NF15686_high_3
Description: NF15686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15686_high_3
NF15686_high_3
[»] chr2 (7 HSPs)
chr2 (6-464)||(34485917-34486360)
chr2 (377-464)||(34460944-34461031)
chr2 (376-464)||(34474617-34474709)
chr2 (380-462)||(34449574-34449656)
chr2 (71-188)||(16114225-16114342)
chr2 (74-238)||(9011369-9011532)
chr2 (243-298)||(1465747-1465802)
[»] chr5 (2 HSPs)
chr5 (17-163)||(16999113-16999259)
chr5 (36-93)||(12318507-12318564)
[»] chr3 (5 HSPs)
chr3 (71-241)||(1319052-1319222)
chr3 (86-239)||(4293304-4293456)
chr3 (252-298)||(7558130-7558176)
chr3 (81-162)||(28715147-28715228)
chr3 (242-270)||(35970497-35970525)
[»] chr4 (3 HSPs)
chr4 (379-460)||(6130513-6130594)
chr4 (74-161)||(36083560-36083647)
chr4 (247-303)||(21218984-21219040)
[»] chr6 (3 HSPs)
chr6 (53-163)||(11966512-11966622)
chr6 (74-160)||(21098561-21098647)
chr6 (74-143)||(20743061-20743130)
[»] chr8 (1 HSPs)
chr8 (368-464)||(1594135-1594231)
[»] chr1 (2 HSPs)
chr1 (74-161)||(9923847-9923934)
chr1 (74-161)||(11910136-11910223)
[»] chr7 (1 HSPs)
chr7 (74-244)||(26641086-26641255)
[»] scaffold0127 (2 HSPs)
scaffold0127 (124-188)||(28527-28591)
scaffold0127 (124-188)||(35433-35497)


Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 6 - 464
Target Start/End: Original strand, 34485917 - 34486360
Alignment:
Q  6 aggagcacagacagaaaaaccctttaaatactgcccagaaatttcatgcggattatcgtagaagtatatccgcaggtaagtttcctgcagtttctaaaat 105  Q
    |||| ||| ||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||||||            |||||||||    
T  34485917 aggatcacggacagaaaaacccttaaaatactgcccaaaaatttcatgcagattatcgtagaagtatatccgcaggtaa------------ttctaaaat 34486004  T
Q  106 ccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaaaggctttcctgcggacatttccccgaaatccg 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  34486005 ccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattccacatgaaaaggctttcctgcggacatttccctgaaatccg 34486104  T
Q  206 taggtaattccgcaggacaatcgaaagtttctagtaatgtgttttcatatttattaattgacgtggcaatacacccttaaatgcatgtgtaaattaatcg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34486105 taggtaattccgcaggacaatcgaaagtttctagtaatgtgttttcatatttattaattgacgtggcaatacacccttaaatgcatgtataaattaatcg 34486204  T
Q  306 tacatcaacgtaatatactaattaagttcataataaatattataaagtttgtaattaataagctttgggattcaaatcaacctctggattgcttgagtga 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  34486205 tacatcaacgtaatatactaattaagttcataataaatattataaagtttg---ttaataagctttgggattcaaatcaacctctggattgcttgagtga 34486301  T
Q  406 agagctcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagagaaata 464  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34486302 agagctcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagagaaata 34486360  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 377 - 464
Target Start/End: Original strand, 34460944 - 34461031
Alignment:
Q  377 tcaaatcaacctctggattgcttgagtgaagagctcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagagaaata 464  Q
    ||||||||||||||||||||| || ||||| || |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||    
T  34460944 tcaaatcaacctctggattgcctgtgtgaatagttcaagttcttcaactgtgccgtaggcatcataagtatcatctacaagagaaata 34461031  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 376 - 464
Target Start/End: Original strand, 34474617 - 34474709
Alignment:
Q  376 ttcaaatcaacctctggattgcttgagtgaagagctcaagttcttcaaccgtgcc----ataggcatcataagtatcatctaaaagagaaata 464  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||| |||||    ||||||||||||||||||||||| ||||||||||    
T  34474617 ttcaaatcaacctctggattgcttgtgtgaagagttcaagttcttcaactgtgccatatataggcatcataagtatcatctagaagagaaata 34474709  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 380 - 462
Target Start/End: Original strand, 34449574 - 34449656
Alignment:
Q  380 aatcaacctctggattgcttgagtgaagagctcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagagaaa 462  Q
    ||||||||| || |||||||  ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34449574 aatcaacctttgcattgcttctgtgaaaagttcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagagaaa 34449656  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 16114225 - 16114342
Alignment:
Q  71 atatccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattgcacatg 170  Q
    ||||||||| ||| ||||| ||| ||| ||||||||||| ||||||||||  |||| ||||||||||||||||| |||||||||||  ||||  | || |    
T  16114225 atatccgcatgtatgtttcttgcggttcctaaaatccttaggaaacagttacccacaaaggtattagctgggaacctgaatccttgataaatgccgcagg 16114324  T
Q  171 aaaaggctttcctgcgga 188  Q
    |||| |||||||||||||    
T  16114325 aaaaagctttcctgcgga 16114342  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 9011369 - 9011532
Alignment:
Q  74 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaa 173  Q
    |||||||| | ||||||||||||||||||||||||  ||||| | ||  |||||||||||||| ||||||| || || |||||||||| |   || | ||    
T  9011369 tccgcaggaatgtttcctgcagtttctaaaatcctcaggaaataattacccacgaaggtattatctgggaacctaaagccttggcaaaatctgca-ggaa 9011467  T
Q  174 aggctttcctgcggacatttccccgaaatccgtaggtaattccgcaggacaatcgaaagtttcta 238  Q
    ||| ||||||||||| || |   ||| ||||  |||||||||||||||| ||| |||||||||||    
T  9011468 aggatttcctgcggaaatgttaacgatatccccaggtaattccgcaggaaaattgaaagtttcta 9011532  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 1465802 - 1465747
Alignment:
Q  243 tgtgttttcatatttattaattgacgtggcaatacacccttaaatgcatgtgtaaa 298  Q
    |||||||||||||||||||||||||||| ||| ||| | ||  |||||||||||||    
T  1465802 tgtgttttcatatttattaattgacgtgacaacacatcattggatgcatgtgtaaa 1465747  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 16999259 - 16999113
Alignment:
Q  17 cagaaaaaccctttaaatactgcccagaaatttcatgcggattatcgtagaagtatatccgcaggtaagtttcctgcagtttctaaaatccttgggaaac 116  Q
    |||||||| |||| |||  |||||||||| |||| ||| |||||| || | |||||||||| || || ||||||||| ||||||| |||||| ||||||     
T  16999259 cagaaaaatccttgaaacgctgcccagaagtttcctgcagattattgtgggagtatatccggagttacgtttcctgcggtttctataatcctcgggaaaa 16999160  T
Q  117 agttttccacgaaggtattagctgggaaactgaatccttggcaaatt 163  Q
      || |||||||||||||||||| |||| |||||||| |||||||||    
T  16999159 cattatccacgaaggtattagctaggaacctgaatccctggcaaatt 16999113  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 93
Target Start/End: Complemental strand, 12318564 - 12318507
Alignment:
Q  36 ctgcccagaaatttcatgcggattatcgtagaagtatatccgcaggtaagtttcctgc 93  Q
    |||||||||| |||| | |||||||||  || ||||||||||||| ||||||||||||    
T  12318564 ctgcccagaagtttcctacggattatcaaaggagtatatccgcagttaagtttcctgc 12318507  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 1319052 - 1319222
Alignment:
Q  71 atatccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattgcacatg 170  Q
    ||||||||||| |  |||||||| ||| ||||||||||  ||||||| ||  |||||||||||||||||||||| ||||||||||| |||||| | || |    
T  1319052 atatccgcaggaacttttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggtattagctgggaacctgaatccttgacaaattccgcagg 1319151  T
Q  171 aaaaggctttcctgcggacatttccccgaaatccgtaggtaattccgcaggacaatcgaaagtttctagta 241  Q
    |||   |||||||||||| || | ||   | |||  |||||||||||||||| | |||| |||||||||||    
T  1319152 aaataactttcctgcggaaatatacctatattccacaggtaattccgcaggaaattcgagagtttctagta 1319222  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 239
Target Start/End: Complemental strand, 4293456 - 4293304
Alignment:
Q  86 tttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaaaggctttcctgc 185  Q
    |||||||||||||||||||||||  ||||||| ||  |||| |||||  || ||||||| || | ||||| ||||| | | || |||| || ||||||||    
T  4293456 tttcctgcagtttctaaaatcctaaggaaacaattacccacaaaggttatacctgggaacctaagtccttagcaaaatccgcaggaaatgg-tttcctgc 4293358  T
Q  186 ggacatttccccgaaatccgtaggtaattccgcaggacaatcgaaagtttctag 239  Q
    ||| ||||| || || |||| || | ||||||||||| |||||| |||||||||    
T  4293357 ggaaatttcaccaaactccgcagatgattccgcaggaaaatcgagagtttctag 4293304  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 7558130 - 7558176
Alignment:
Q  252 atatttattaattgacgtggcaatacacccttaaatgcatgtgtaaa 298  Q
    |||||||||||||| |||| ||||||||| |||||| ||||||||||    
T  7558130 atatttattaattggcgtgacaatacaccattaaatacatgtgtaaa 7558176  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 28715228 - 28715147
Alignment:
Q  81 gtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaat 162  Q
    |||| |||||||| ||||||||||||||  ||||||| ||  || |||||||||||| |||||| || |||| ||| |||||    
T  28715228 gtaactttcctgcggtttctaaaatcctaaggaaacaattacccgcgaaggtattagttgggaacctaaatcgttgacaaat 28715147  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 35970497 - 35970525
Alignment:
Q  242 atgtgttttcatatttattaattgacgtg 270  Q
    |||||||||||||||||||||||||||||    
T  35970497 atgtgttttcatatttattaattgacgtg 35970525  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 460
Target Start/End: Complemental strand, 6130594 - 6130513
Alignment:
Q  379 aaatcaacctctggattgcttgagtgaagagctcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagaga 460  Q
    |||||||||| |||||||| || |||||||| |||||||||||||| || ||| | ||||||||||||||||||||||||||    
T  6130594 aaatcaacctttggattgcctgtgtgaagagttcaagttcttcaactgtaccaaatgcatcataagtatcatctaaaagaga 6130513  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 36083647 - 36083560
Alignment:
Q  74 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaa 161  Q
    ||||||||| |||||||||| ||| ||||||||||  ||||||| ||  |||||||||||||| ||||||| || |||||||||||||    
T  36083647 tccgcaggtgagtttcctgcggttcctaaaatcctcaggaaacaattacccacgaaggtattacctgggaaccttaatccttggcaaa 36083560  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 21218984 - 21219040
Alignment:
Q  247 ttttcatatttattaattgacgtggcaatacacccttaaatgcatgtgtaaattaat 303  Q
    |||| ||||||||||||||||||| ||| ||||  ||||||||||||||||| ||||    
T  21218984 ttttgatatttattaattgacgtgacaacacactattaaatgcatgtgtaaaataat 21219040  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 11966512 - 11966622
Alignment:
Q  53 gcggattatcgtagaagtatatccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatc 152  Q
    |||||||||| ||  |||||||||||||  ||||||||||| ||||| ||||| ||   |||||||||  |||||||||||||||||||||| || ||||    
T  11966512 gcggattatcatacgagtatatccgcagtcaagtttcctgcggtttcgaaaattctcacgaaacagttacccacgaaggtattagctgggaacctaaatc 11966611  T
Q  153 cttggcaaatt 163  Q
    ||| |||||||    
T  11966612 cttagcaaatt 11966622  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 21098647 - 21098561
Alignment:
Q  74 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaa 160  Q
    |||||||| ||||||||||| ||||||||||||||  ||||||| ||  ||||||||||  || | ||||| || ||||||||||||    
T  21098647 tccgcaggaaagtttcctgcggtttctaaaatcctatggaaacaattacccacgaaggttataccagggaacctaaatccttggcaa 21098561  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 20743130 - 20743061
Alignment:
Q  74 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctggga 143  Q
    |||||||| || |||||||| ||||||||||||||  |||||||  | ||||||||||||||| ||||||    
T  20743130 tccgcaggaaattttcctgcggtttctaaaatcctcaggaaacaactatccacgaaggtattacctggga 20743061  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 368 - 464
Target Start/End: Original strand, 1594135 - 1594231
Alignment:
Q  368 ctttgggattcaaatcaacctctggattgcttgagtgaagagctcaagttcttcaaccgtgccataggcatcataagtatcatctaaaagagaaata 464  Q
    |||| |||||||||||||||| |  ||||| || |||||||| |||||||||||||||||||| |||  |||||| |||||||||| ||| ||||||    
T  1594135 cttttggattcaaatcaacctttctattgcctgcgtgaagagttcaagttcttcaaccgtgccgtagttatcatatgtatcatctagaagtgaaata 1594231  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 9923934 - 9923847
Alignment:
Q  74 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaa 161  Q
    ||||||||||| |||||||| ||| ||||||||||  ||||||| ||  |||||||||||||| ||||||| || |||||||||||||    
T  9923934 tccgcaggtaaatttcctgcggttactaaaatcctcaggaaacaattacccacgaaggtattacctgggaaccttaatccttggcaaa 9923847  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 11910223 - 11910136
Alignment:
Q  74 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaa 161  Q
    ||||||||| |||||||||  ||| ||||||||||  ||||||| ||  |||||||||||||| |||| || || |||| ||||||||    
T  11910223 tccgcaggttagtttcctggggttcctaaaatcctcaggaaacaattagccacgaaggtattacctggtaaccttaatcgttggcaaa 11910136  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 26641086 - 26641255
Alignment:
Q  74 tccgcaggtaagtttcctgcagtttctaaaatccttgggaaacagttttccacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaa 173  Q
    ||||||||||  |||||||| ||||||||||||||  |||||||  ||||||| ||||||||| |||||||| | ||||||||  ||| | | |  ||||    
T  26641086 tccgcaggtacatttcctgcggtttctaaaatcctcaggaaaca-atttccactaaggtattacctgggaaaattaatccttgataaaatccgctggaaa 26641184  T
Q  174 aggctttcctgcggacatttccccgaaatccgtaggtaattccgcaggacaatcgaaagtttctagtaatg 244  Q
      | ||||||||||| |||||     |||||||||| ||||||| |||| |||||  ||||||||||||||    
T  26641185 caggtttcctgcggaaatttcagtataatccgtaggaaattccggaggaaaatcgggagtttctagtaatg 26641255  T

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Target: scaffold0127 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 28527 - 28591
Alignment:
Q  124 cacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaaaggctttcctgcgga 188  Q
    ||||||||||||| ||||||| |||||||||||| ||| | | |||||||  | |||||||||||    
T  28527 cacgaaggtattacctgggaacctgaatccttgggaaaatccgcatgaaaccgatttcctgcgga 28591  T

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Target: scaffold0127; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 35433 - 35497
Alignment:
Q  124 cacgaaggtattagctgggaaactgaatccttggcaaattgcacatgaaaaggctttcctgcgga 188  Q
    ||||||||||||| ||||||| |||||||||||| ||| | | |||||||  | |||||||||||    
T  35433 cacgaaggtattacctgggaacctgaatccttgggaaaatccgcatgaaaccgatttcctgcgga 35497  T

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