View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15686_high_9 (Length: 307)

Name: NF15686_high_9
Description: NF15686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15686_high_9
NF15686_high_9
[»] chr5 (4 HSPs)
chr5 (18-128)||(35328464-35328574)
chr5 (235-298)||(35332738-35332801)
chr5 (145-185)||(35328770-35328810)
chr5 (185-220)||(35332659-35332694)
[»] chr1 (1 HSPs)
chr1 (171-213)||(35812108-35812150)
[»] chr8 (1 HSPs)
chr8 (171-216)||(3587168-3587213)
[»] chr3 (1 HSPs)
chr3 (171-213)||(28145040-28145082)
[»] chr7 (1 HSPs)
chr7 (171-211)||(28195394-28195434)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 35328464 - 35328574
Alignment:
Q  18 aatacttcatatgtcttataataattgtcatatttgtaaacaagttgtttcaaaaagagtgttccatgtatttttcaatgtagttttttccttcttcaag 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  35328464 aatacttcatatgtcctataataattgtcatatttgtaaacaagttgtttcaaaaagagtgttccgtgtatttttcattgtaattttttccttcttcaag 35328563  T
Q  118 tgtacaatcta 128  Q
    |||||||||||    
T  35328564 tgtacaatcta 35328574  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 298
Target Start/End: Original strand, 35332738 - 35332801
Alignment:
Q  235 aaattgccgtattctggtattggtatccgcgtcataccggataccaatatacatgtacctatgc 298  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35332738 aaattgtcgtattctggtattggtatccgcgtcataccggataccaatatacatgtacctatgc 35332801  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 35328770 - 35328810
Alignment:
Q  145 ttaaagaatttagctctctcttgtagtcattttatattata 185  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  35328770 ttaaagaatttagctctctcatgtagtcatattatattata 35328810  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 35332659 - 35332694
Alignment:
Q  185 ataacaaaaatcatgattttattgacgtatttgtat 220  Q
    ||||||||| ||||||||||||||||||||||||||    
T  35332659 ataacaaaactcatgattttattgacgtatttgtat 35332694  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 35812150 - 35812108
Alignment:
Q  171 tcattttatattatataacaaaaatcatgattttattgacgta 213  Q
    |||| |||||||||||||||||| |||||||||||||||||||    
T  35812150 tcatgttatattatataacaaaactcatgattttattgacgta 35812108  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 3587168 - 3587213
Alignment:
Q  171 tcattttatattatataacaaaaatcatgattttattgacgtattt 216  Q
    |||| |||||||||||||||||| ||||||||| ||||||||||||    
T  3587168 tcatgttatattatataacaaaattcatgatttcattgacgtattt 3587213  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 28145040 - 28145082
Alignment:
Q  171 tcattttatattatataacaaaaatcatgattttattgacgta 213  Q
    |||| |||||||||||| ||||| |||||||||||||||||||    
T  28145040 tcatgttatattatatagcaaaactcatgattttattgacgta 28145082  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 211
Target Start/End: Original strand, 28195394 - 28195434
Alignment:
Q  171 tcattttatattatataacaaaaatcatgattttattgacg 211  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  28195394 tcatgttatattatataacaaaactcatgattttcttgacg 28195434  T

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