View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15686_low_10 (Length: 286)

Name: NF15686_low_10
Description: NF15686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15686_low_10
NF15686_low_10
[»] chr5 (5 HSPs)
chr5 (11-139)||(16194361-16194489)
chr5 (14-115)||(39946539-39946640)
chr5 (47-148)||(29595541-29595642)
chr5 (78-135)||(39945857-39945914)
chr5 (78-148)||(16195107-16195177)
[»] chr1 (3 HSPs)
chr1 (14-135)||(6942203-6942324)
chr1 (100-148)||(2261543-2261591)
chr1 (100-151)||(12449312-12449363)
[»] chr7 (4 HSPs)
chr7 (99-148)||(30581265-30581314)
chr7 (99-144)||(36611737-36611782)
chr7 (77-135)||(3314968-3315026)
chr7 (99-149)||(36611550-36611600)
[»] chr4 (6 HSPs)
chr4 (100-148)||(51386456-51386504)
chr4 (81-148)||(34450815-34450882)
chr4 (99-148)||(14527575-14527624)
chr4 (99-148)||(45393981-45394030)
chr4 (94-151)||(56227049-56227106)
chr4 (101-153)||(24666124-24666176)
[»] chr2 (1 HSPs)
chr2 (99-148)||(20606920-20606969)
[»] chr3 (4 HSPs)
chr3 (104-151)||(47571943-47571990)
chr3 (98-135)||(54308466-54308503)
chr3 (76-148)||(18745346-18745418)
chr3 (104-152)||(49349672-49349720)
[»] chr6 (1 HSPs)
chr6 (106-148)||(5312241-5312283)
[»] chr8 (1 HSPs)
chr8 (111-148)||(42664008-42664045)


Alignment Details
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 16194489 - 16194361
Alignment:
Q  11 cagagagaagagaggatatggagcaaagatccaatgtggtaataagtaatgaaatcctatagacatatttaatctgatggtggaataaagtggttcactg 110  Q
    ||||||||| |||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||    
T  16194489 cagagagaaaagaggacatggagcaaagatccagtgtggtaataagtaatgaaattctagagacatatttaatctgacggtggaataaagtggttcactg 16194390  T
Q  111 gtgagggacttaattgacccctcactcta 139  Q
     ||| |||||||||||| |||||||||||    
T  16194389 atgatggacttaattgatccctcactcta 16194361  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 39946539 - 39946640
Alignment:
Q  14 agagaagagaggatatggagcaaagatccaatgtggtaataagtaatgaaatcctatagacatatttaatctgatggtggaataaagtggttcactggtg 113  Q
    |||||||| | || |||||||||||||||| |||||||||||||||||||||| | ||||| |||||||||| | |||| ||| ||||||||||||||||    
T  39946539 agagaagacatgacatggagcaaagatccagtgtggtaataagtaatgaaatcttgtagacgtatttaatctaacggtgaaattaagtggttcactggtg 39946638  T
Q  114 ag 115  Q
    ||    
T  39946639 ag 39946640  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 148
Target Start/End: Original strand, 29595541 - 29595642
Alignment:
Q  47 tggtaataagtaatgaaatcctatagacatatttaatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcactctaaaattca 146  Q
    |||| |||| |||||| ||| ||||| | |||||||||| |||||  |||||| |||| |||||||||||||||||||||| ||||||| ||| ||| ||    
T  29595541 tggttataaataatgagatcttatagtcttatttaatctaatggtcaaataaactggtacactggtgagggacttaattgaaccctcacgctagaatcca 29595640  T
Q  147 cc 148  Q
    ||    
T  29595641 cc 29595642  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 39945914 - 39945857
Alignment:
Q  78 tttaatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcac 135  Q
    |||||||||| |||||||||||||||| ||| | |||||||||||||||  |||||||    
T  39945914 tttaatctgacggtggaataaagtggtacaccgatgagggacttaattggtccctcac 39945857  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 16195107 - 16195177
Alignment:
Q  78 tttaatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcactctaaaattcacc 148  Q
    |||||||||| |||||||||| ||||| |||  |||| |||||||||||| ||||||| ||| ||| ||||    
T  16195107 tttaatctgacggtggaataatgtggtacaccagtgatggacttaattgatccctcaccctagaatccacc 16195177  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 135
Target Start/End: Complemental strand, 6942324 - 6942203
Alignment:
Q  14 agagaagagaggatatggagcaaagatccaatgtggtaataagtaatgaaatcctatagacatatttaatctgatggtggaataaagtggttcactggtg 113  Q
    |||||| |||||| ||||||||||||| || |||||||||||||| ||||||| | |||||||||||||||| | |||||||||||||||||||| | ||    
T  6942324 agagaatagaggacatggagcaaagattcagtgtggtaataagtattgaaatcttgtagacatatttaatctaacggtggaataaagtggttcaccgatg 6942225  T
Q  114 agggacttaattgacccctcac 135  Q
    | |||||||||||| |||||||    
T  6942224 aaggacttaattgatccctcac 6942203  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 2261543 - 2261591
Alignment:
Q  100 gtggttcactggtgagggacttaattgacccctcactctaaaattcacc 148  Q
    |||||||||||||||||| ||||||||| ||||||| ||||||||||||    
T  2261543 gtggttcactggtgaggggcttaattgaaccctcaccctaaaattcacc 2261591  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 12449312 - 12449363
Alignment:
Q  100 gtggttcactggtgagggacttaattgacccctcactctaaaattcaccgtt 151  Q
    ||||| ||| |||||||||||||||||| ||||||| ||||||| |||||||    
T  12449312 gtggtccaccggtgagggacttaattgatccctcaccctaaaatccaccgtt 12449363  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 30581265 - 30581314
Alignment:
Q  99 agtggttcactggtgagggacttaattgacccctcactctaaaattcacc 148  Q
    ||||||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  30581265 agtggttcactggtgagggacttaattgaaccctcaccctagaattcacc 30581314  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 36611737 - 36611782
Alignment:
Q  99 agtggttcactggtgagggacttaattgacccctcactctaaaatt 144  Q
    |||||||||||| |||||||||||||||| ||||||| ||||||||    
T  36611737 agtggttcactgatgagggacttaattgaaccctcaccctaaaatt 36611782  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 3315026 - 3314968
Alignment:
Q  77 atttaatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcac 135  Q
    ||||||||  |||||  ||||||||||| ||| |||||||||||||||||| |||||||    
T  3315026 atttaatccaatggttaaataaagtggtacaccggtgagggacttaattgaaccctcac 3314968  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 36611600 - 36611550
Alignment:
Q  99 agtggttcactggtgagggacttaattgacccctcactctaaaattcaccg 149  Q
    |||||||||| |||||||||||||||||| ||||||| ||| |||| ||||    
T  36611600 agtggttcaccggtgagggacttaattgaaccctcaccctagaatttaccg 36611550  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 51386504 - 51386456
Alignment:
Q  100 gtggttcactggtgagggacttaattgacccctcactctaaaattcacc 148  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  51386504 gtggttcactggtgagggacttaattgaaccctcaccctaaaatccacc 51386456  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 34450882 - 34450815
Alignment:
Q  81 aatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcactctaaaattcacc 148  Q
    ||||| |||||||  ||||||| | ||| |||||||||||||||||| ||||||| ||| ||||||||    
T  34450882 aatctaatggtggcttaaagtgctccaccggtgagggacttaattgatccctcaccctagaattcacc 34450815  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 14527575 - 14527624
Alignment:
Q  99 agtggttcactggtgagggacttaattgacccctcactctaaaattcacc 148  Q
    |||||||||| |||||||||||||||||| ||||||| ||| ||| ||||    
T  14527575 agtggttcaccggtgagggacttaattgatccctcaccctagaatccacc 14527624  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 45394030 - 45393981
Alignment:
Q  99 agtggttcactggtgagggacttaattgacccctcactctaaaattcacc 148  Q
    |||||||||| ||| || ||||||||||| ||||||||||| ||||||||    
T  45394030 agtggttcaccggtaagagacttaattgaaccctcactctagaattcacc 45393981  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 56227049 - 56227106
Alignment:
Q  94 aataaagtggttcactggtgagggacttaattgacccctcactctaaaattcaccgtt 151  Q
    ||||||||||| ||| ||||| |||||| ||||| ||||||||||| ||| |||||||    
T  56227049 aataaagtggtacaccggtgaaggacttcattgagccctcactctagaatccaccgtt 56227106  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 24666176 - 24666124
Alignment:
Q  101 tggttcactggtgagggacttaattgacccctcactctaaaattcaccgttat 153  Q
    |||||||| |||||||||||||||||| ||||||| ||| ||| |||| ||||    
T  24666176 tggttcaccggtgagggacttaattgatccctcaccctagaatccaccattat 24666124  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 20606920 - 20606969
Alignment:
Q  99 agtggttcactggtgagggacttaattgacccctcactctaaaattcacc 148  Q
    |||||||||| |||||||||||||||||| ||||||| ||| ||||||||    
T  20606920 agtggttcaccggtgagggacttaattgaaccctcaccctagaattcacc 20606969  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 47571943 - 47571990
Alignment:
Q  104 ttcactggtgagggacttaattgacccctcactctaaaattcaccgtt 151  Q
    ||||| |||||||||||||||||| ||||||| ||| |||||||||||    
T  47571943 ttcaccggtgagggacttaattgatccctcaccctagaattcaccgtt 47571990  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 54308503 - 54308466
Alignment:
Q  98 aagtggttcactggtgagggacttaattgacccctcac 135  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  54308503 aagtggttcaccggtgagggacttaattgaaccctcac 54308466  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 18745346 - 18745418
Alignment:
Q  76 tatttaatctgatggtggaataaagtggttcactggtgagggacttaattgacccctcactctaaaattcacc 148  Q
    |||||||||| |||||  |||  |||||| ||| |||||||||||| ||||| ||||||| ||| ||||||||    
T  18745346 tatttaatctaatggtcaaattcagtggtgcaccggtgagggacttgattgaaccctcaccctagaattcacc 18745418  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 49349720 - 49349672
Alignment:
Q  104 ttcactggtgagggacttaattgacccctcactctaaaattcaccgtta 152  Q
    ||||| |||||||||||||||||| ||||||| ||| ||| ||||||||    
T  49349720 ttcaccggtgagggacttaattgatccctcaccctagaatccaccgtta 49349672  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 5312283 - 5312241
Alignment:
Q  106 cactggtgagggacttaattgacccctcactctaaaattcacc 148  Q
    |||||||||||||||||||||| |||||||| || ||||||||    
T  5312283 cactggtgagggacttaattgaaccctcactgtagaattcacc 5312241  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 42664008 - 42664045
Alignment:
Q  111 gtgagggacttaattgacccctcactctaaaattcacc 148  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  42664008 gtgagggacttaattgaaccctcaccctaaaattcacc 42664045  T

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