View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15686_low_11 (Length: 252)

Name: NF15686_low_11
Description: NF15686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15686_low_11
NF15686_low_11
[»] scaffold1643 (1 HSPs)
scaffold1643 (19-242)||(612-835)
[»] chr3 (47 HSPs)
chr3 (40-203)||(6945731-6945894)
chr3 (19-151)||(6840627-6840759)
chr3 (30-242)||(8470013-8470222)
chr3 (19-186)||(6840319-6840486)
chr3 (20-157)||(8570407-8570541)
chr3 (40-203)||(6796021-6796181)
chr3 (40-186)||(8453098-8453241)
chr3 (20-133)||(7586314-7586424)
chr3 (19-127)||(6522968-6523073)
chr3 (19-127)||(6841059-6841164)
chr3 (21-151)||(6528475-6528602)
chr3 (44-156)||(6481439-6481548)
chr3 (35-127)||(6521888-6521977)
chr3 (31-127)||(6522023-6522116)
chr3 (35-127)||(6522293-6522382)
chr3 (35-127)||(6522833-6522922)
chr3 (19-127)||(6840924-6841029)
chr3 (31-127)||(6522158-6522251)
chr3 (35-127)||(6522563-6522652)
chr3 (40-242)||(6734416-6734612)
chr3 (31-186)||(6450221-6450373)
chr3 (31-186)||(6730149-6730301)
chr3 (19-242)||(6521506-6521723)
chr3 (40-128)||(6528363-6528448)
chr3 (36-127)||(6556200-6556288)
chr3 (30-149)||(6592810-6592926)
chr3 (31-79)||(6942390-6942438)
chr3 (19-69)||(6734116-6734166)
chr3 (40-190)||(6781103-6781247)
chr3 (19-69)||(6781497-6781547)
chr3 (41-242)||(6555818-6556013)
chr3 (36-127)||(6556065-6556153)
chr3 (22-151)||(6932040-6932166)
chr3 (19-127)||(6840789-6840894)
chr3 (30-149)||(6915557-6915673)
chr3 (22-150)||(6796209-6796337)
chr3 (40-162)||(8588275-8588394)
chr3 (31-69)||(6521808-6521846)
chr3 (31-69)||(6522483-6522521)
chr3 (31-69)||(6522753-6522791)
chr3 (30-149)||(6723536-6723652)
chr3 (30-149)||(6880972-6881088)
chr3 (83-187)||(4390336-4390440)
chr3 (37-127)||(6840516-6840603)
chr3 (30-69)||(7748458-7748497)
chr3 (30-145)||(6236181-6236293)
chr3 (83-123)||(5248683-5248723)
[»] scaffold0958 (1 HSPs)
scaffold0958 (29-153)||(1249-1370)
[»] scaffold0425 (2 HSPs)
scaffold0425 (40-242)||(8866-9062)
scaffold0425 (40-151)||(9224-9332)


Alignment Details
Target: scaffold1643 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 612 - 835
Alignment:
Q  19 gttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagc 118  Q
    |||||||||  |||| | ||||||||||||| |||||||||||||||||||   |||||||| ||||||||| || ||||||||||||||||||||||||    
T  612 gttgcaatcagtaatattcagtttttgtaaaaaaggaaggtgttgaggcagagtggccctttctaatttgggacactttcttatagtaagctctttaagc 711  T
Q  119 aaaggaaacccttcacgacaaaaccattcctcccaattgaccatatcctccaatttcaaaacttcaagggacaagaacggaacatgcgttaaattgttgc 218  Q
    ||||||||||||||| |||| ||||||||||||||||||  ||  | ||| ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  712 aaaggaaacccttcaggacacaaccattcctcccaattgttcaacttctcaaatttcaaaacttcaagggacaagaacggaacatgcgttaaattgctgc 811  T
Q  219 catgaatctcttcaccaatgatct 242  Q
    ||||||||||||||||||||||||    
T  812 catgaatctcttcaccaatgatct 835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 6945731 - 6945894
Alignment:
Q  40 tttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacccttcacgacaa 139  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  6945731 tttttgtaaagaaggaaggtgttgaggcagcaaggcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacctttcaggacaa 6945830  T
Q  140 aaccattcctcccaattgaccatatcctccaatttcaaaacttcaagggacaagaacggaacat 203  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||    
T  6945831 aaccattcctcccaattgaccatatgctccaatttcaaaacttcaagggacctgaacggaacat 6945894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 6840759 - 6840627
Alignment:
Q  19 gttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagc 118  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  6840759 gttgcaatcacaaatcttcagtttttgtaaagaaggaaggtgttgaggtagcaaggccctttttaatttggggcaatttcttatagaaatctctttaagc 6840660  T
Q  119 aaaggaaacccttcacgacaaaaccattcctcc 151  Q
    ||||||| ||||||| |||||||||||| ||||    
T  6840659 aaaggaatcccttcaagacaaaaccatttctcc 6840627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 242
Target Start/End: Original strand, 8470013 - 8470222
Alignment:
Q  30 taatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaaccc 129  Q
    ||||||| | |||||||||||||||||||||||||||||   | || ||| | |||| ||| ||  || |||||| ||||||||||||||||||||||||    
T  8470013 taatctctaatttttgtaaagaaggaaggtgttgaggca---atgcgcttctcaattcgggacagctttttatagaaagctctttaagcaaaggaaaccc 8470109  T
Q  130 ttcacgacaaaaccattcctcccaattgaccatatcctccaatttcaaaacttcaagggacaagaacggaacatgcgttaaattgttgccatgaatctct 229  Q
    |||| |||| ||||||||||||||| ||  ||| | | | ||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||||    
T  8470110 ttcaagacacaaccattcctcccaactgttcatcttcacaaatttcaaaacttcaagggacaagaacggaacatttgttgaattgttgccatgaaactct 8470209  T
Q  230 tcaccaatgatct 242  Q
    |||||||| ||||    
T  8470210 tcaccaattatct 8470222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 6840486 - 6840319
Alignment:
Q  19 gttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagc 118  Q
    ||||||||  ||||||||||| ||||||||||||| |||||||| ||||||||  ||| |||| |||||||| || |||||||||| || || |||||||    
T  6840486 gttgcaataactaatctccagcttttgtaaagaagtaaggtgtttaggcagcactgcctttttcaatttgggacattttcttatagaaatctttttaagc 6840387  T
Q  119 aaaggaaacccttcacgacaaaaccattcctcccaattgaccatatcctccaatttcaaaacttcaag 186  Q
    ||||||||||||||| |||||||||||| ||||||||||  ||| | ||| |||||||||||||||||    
T  6840386 aaaggaaacccttcaagacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaag 6840319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 8570541 - 8570407
Alignment:
Q  20 ttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagca 119  Q
    |||||||| || |||||||||||||||||||||||||||||| |||||||   ||||||||| ||| || | |||| |||||||| ||||| ||||||||    
T  8570541 ttgcaatcactgatctccagtttttgtaaagaaggaaggtgtcgaggcag---ggcccttttcaatctgtgacaatatcttatagaaagctttttaagca 8570445  T
Q  120 aaggaaacccttcacgacaaaaccattcctcccaattg 157  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  8570444 aaggaaacccttcaatacaaaaccattcctcccaattg 8570407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 40 - 203
Target Start/End: Complemental strand, 6796181 - 6796021
Alignment:
Q  40 tttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacccttcacgacaa 139  Q
    |||||||||||||||||||| ||||||| |    |||||||| |||| | | ||| || |||||  |||||||||||||||||||||||||||| |||||    
T  6796181 tttttgtaaagaaggaaggttttgaggctga---gcccttttcaattcgtgacaacttgttatataaagctctttaagcaaaggaaacccttcaagacaa 6796085  T
Q  140 aaccattcctcccaattgaccatatcctccaatttcaaaacttcaagggacaagaacggaacat 203  Q
    |||||||||||||||||| |||| ||||| ||||||||||| |||||||||  ||||| |||||    
T  6796084 aaccattcctcccaattgtccatctcctcaaatttcaaaacctcaagggacctgaacgaaacat 6796021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 8453098 - 8453241
Alignment:
Q  40 tttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacccttcacgacaa 139  Q
    ||||||||||||||||||||||||||||||   || | |||| |||||||| || | |||||||  |||||||||||||||||||||||||||| ||||     
T  8453098 tttttgtaaagaaggaaggtgttgaggcag---ggacattttcaatttgggacattctcttatataaagctctttaagcaaaggaaacccttcaagacac 8453194  T
Q  140 aaccattcctcccaattgaccatatcctccaatttcaaaacttcaag 186  Q
    ||||||||||||||||||  ||| | ||| |||||||||||||||||    
T  8453195 aaccattcctcccaattgttcatcttctcaaatttcaaaacttcaag 8453241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 7586314 - 7586424
Alignment:
Q  20 ttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagca 119  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||||    |||||||| || ||||| || ||| |||||| ||||||||||||||    
T  7586314 ttgcaatctttaatctccagtttctgtaaagaaggaaggtgttgaggcag---agcccttttcaacttgggacatttttttatagaaagctctttaagca 7586410  T
Q  120 aaggaaacccttca 133  Q
    ||||||||||||||    
T  7586411 aaggaaacccttca 7586424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 6523073 - 6522968
Alignment:
Q  19 gttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagc 118  Q
    ||||||||  ||||||| |||||||||||||||||||||||||||||||||    |||||||| |||| ||| ||||||||||||| || ||||||||||    
T  6523073 gttgcaattactaatcttcagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagc 6522977  T
Q  119 aaaggaaac 127  Q
    |||||||||    
T  6522976 aaaggaaac 6522968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 6841164 - 6841059
Alignment:
Q  19 gttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagc 118  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||||||||    |||||||| |||| ||| ||||||||||||| || ||||||||||    
T  6841164 gttgcaatcccaaatctgcagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagc 6841068  T
Q  119 aaaggaaac 127  Q
    |||||||||    
T  6841067 aaaggaaac 6841059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 6528602 - 6528475
Alignment:
Q  21 tgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaa 120  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||    |||||||| |||| ||| ||| || |||||| || ||||||||||||    
T  6528602 tgcaatcaataatctccagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaacttgttatagaaatctctttaagcaa 6528506  T
Q  121 aggaaacccttcacgacaaaaccattcctcc 151  Q
    ||||||| || || | || ||||||||||||    
T  6528505 aggaaactctccaaggcataaccattcctcc 6528475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 6481548 - 6481439
Alignment:
Q  44 tgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacccttcacgacaaaacc 143  Q
    ||||||||||||||||||||||| ||   ||||||||| |||||||| |||| | |||||||||||||||||||| |  ||||||||||| |||| ||||    
T  6481548 tgtaaagaaggaaggtgttgaggaag---ggcccttttcaatttgggacaatcttttatagtaagctctttaagcgacagaaacccttcatgacataacc 6481452  T
Q  144 attcctcccaatt 156  Q
    |||||||| ||||    
T  6481451 attcctccaaatt 6481439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 6521977 - 6521888
Alignment:
Q  35 tccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaac 127  Q
    |||||||||||||||||||||||||||||||||||    |||||||| |||| ||| ||||||||||||| || |||||||||||||||||||    
T  6521977 tccagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6521888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 6522116 - 6522023
Alignment:
Q  31 aatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaac 127  Q
    |||||||||||||||||||||||||||||||||| ||||    |||||||| |||| ||| ||||||||||||| || |||||||||||||||||||    
T  6522116 aatctccagtttttgtaaagaaggaaggtgttgatgcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6522023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 6522382 - 6522293
Alignment:
Q  35 tccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaac 127  Q
    |||||||||||||||||||||||||||||||||||    |||||||| |||| ||| ||||||||||||| || |||||||||||||||||||    
T  6522382 tccagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6522293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 6522922 - 6522833
Alignment:
Q  35 tccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaac 127  Q
    |||||||||||||||||||||||||||||||||||    |||||||| |||| ||| ||||||||||||| || |||||||||||||||||||    
T  6522922 tccagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6522833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 6841029 - 6840924
Alignment:
Q  19 gttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagc 118  Q
    ||||||||| | |||||| || |||||||||||||||||||||||||||||    |||||||| |||| ||| ||||||||||||| || ||||||||||    
T  6841029 gttgcaatcccaaatctctagattttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttcttatagaaatctctttaagc 6840933  T
Q  119 aaaggaaac 127  Q
    |||||||||    
T  6840932 aaaggaaac 6840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 6522251 - 6522158
Alignment:
Q  31 aatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaac 127  Q
    ||||||||| |||||||||||||||||||||||| ||||    |||||||| |||| ||| ||||||||||||| || |||||||||||||||||||    
T  6522251 aatctccagattttgtaaagaaggaaggtgttgatgcaga---gcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaac 6522158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 6522652 - 6522563
Alignment:
Q  35 tccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaac 127  Q
    |||||||||||||||||||||||||||||||||||    |||||||| |||| ||| |||||| |||||| || |||||||||||||||||||    
T  6522652 tccagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatttgttatagaaatctctttaagcaaaggaaac 6522563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 242
Target Start/End: Original strand, 6734416 - 6734612
Alignment:
Q  40 tttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacccttcacgacaa 139  Q
    |||||||||||||||||| |||||||||||   ||  | ||| | ||| || |||||| |||||| ||||||| ||||||||||||||| | |||   |     
T  6734416 tttttgtaaagaaggaagatgttgaggcag---ggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaaggaaaccttacac---at 6734509  T
Q  140 aaccattcctcccaattgaccatatcctccaatttcaaaacttcaagggacaagaacggaacatgcgttaaattgttgccatgaatctcttcaccaatga 239  Q
    | |||||||||||| |||||||||||||| ||| |||||  ||||||||||  ||| ||||||   ||| |||| ||||||| || ||||||| ||||||    
T  6734510 atccattcctcccagttgaccatatcctcaaatctcaaatattcaagggacttgaatggaacaattgttgaattattgccataaaactcttcatcaatga 6734609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 6450373 - 6450221
Alignment:
Q  31 aatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaaccct 130  Q
    ||||| || ||||| ||||||||||||||||||||||||   ||||||||| | |||||| |||||||||||   |||||||||||| | ||||||| ||    
T  6450373 aatcttcaatttttctaaagaaggaaggtgttgaggcag---ggcccttttcagtttgggacaatttcttatttcaagctctttaagtagaggaaactct 6450277  T
Q  131 tcacgacaaaaccattcctcccaattgaccatatcctccaatttcaaaacttcaag 186  Q
    |||  | | |||||||||||||||||  |||  | ||| |||||||| ||||||||    
T  6450276 tcaataaataaccattcctcccaattctccaactgctcaaatttcaatacttcaag 6450221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 6730301 - 6730149
Alignment:
Q  31 aatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaaccct 130  Q
    ||||| || ||||| ||||||||||||||||||||||||   ||||||||| | |||||| |||||||||||   |||||||||||| | ||||||| ||    
T  6730301 aatcttcaatttttctaaagaaggaaggtgttgaggcag---ggcccttttcagtttgggacaatttcttatttcaagctctttaagtagaggaaactct 6730205  T
Q  131 tcacgacaaaaccattcctcccaattgaccatatcctccaatttcaaaacttcaag 186  Q
    |||  | | |||||||||||||||||  |||  | ||| |||||||| ||||||||    
T  6730204 tcaataaataaccattcctcccaattctccaattgctcaaatttcaatacttcaag 6730149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 6521723 - 6521506
Alignment:
Q  19 gttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagc 118  Q
    ||||||||| || |||| || |||||||||||||| |||||||||||||||   ||  ||||| ||||| || |||||| |||||  |||||||||||||    
T  6521723 gttgcaatcactgatcttcaatttttgtaaagaagaaaggtgttgaggcag---ggtgcttttcaatttaggacaattttttatataaagctctttaagc 6521627  T
Q  119 aaaggaaacccttcacgacaaaaccattcctcccaattgaccatatcctccaatttcaaaacttcaagggacaagaacggaacatgcgttaaattgttgc 218  Q
    | |||||||| | |   ||| | |||||||||||| |||||||||||||  ||| |||||  || |||||||  ||| ||||||   ||| |||| ||||    
T  6521626 agaggaaaccttac---acatatccattcctcccagttgaccatatcctgaaatctcaaatattgaagggacttgaatggaacaattgttgaattattgc 6521530  T
Q  219 catgaatctcttcaccaatgatct 242  Q
    ||| ||  |||||| |||||||||    
T  6521529 cataaaaatcttcatcaatgatct 6521506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 6528448 - 6528363
Alignment:
Q  40 tttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacc 128  Q
    |||||||||||||||||| ||||||||||   |||  ||||| ||||| || ||||||||||||| |||||||||||||||||||||||    
T  6528448 tttttgtaaagaaggaagctgttgaggca---aggtgcttttcaatttaggacaatttcttatagaaagctctttaagcaaaggaaacc 6528363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 6556288 - 6556200
Alignment:
Q  36 ccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaac 127  Q
    ||||||||||||||||||||||||||||||||||    |||||||| |||| | | ||||||||||||| || | |||||||||||||||||    
T  6556288 ccagtttttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgagacaatttcttatagaaaacactttaagcaaaggaaac 6556200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 6592926 - 6592810
Alignment:
Q  30 taatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaaccc 129  Q
    ||||||||| |||||| |||||||||||||||||||||||   ||| ||||| || ||||| |||| | |||||  |||||||| ||||||||| || ||    
T  6592926 taatctccaatttttgcaaagaaggaaggtgttgaggcag---ggctcttttcaacttgggacaatgttttatacaaagctcttgaagcaaagggaaacc 6592830  T
Q  130 ttcacgacaaaaccattcct 149  Q
    |||| |||| ||||||||||    
T  6592829 ttcaagacataaccattcct 6592810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 6942390 - 6942438
Alignment:
Q  31 aatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctt 79  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6942390 aatcttcagtttttgtaaagaaggaaggtgttgaggcagcaaggccctt 6942438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 6734116 - 6734166
Alignment:
Q  19 gttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcag 69  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  6734116 gttgcaatctctaatctccagtttctgtaaagaaggaaggtgttgtggcag 6734166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 6781247 - 6781103
Alignment:
Q  40 tttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacccttcacgacaa 139  Q
    |||||||||||||||||| |||||||||||   ||  | ||| | ||| || |||||| |||||| ||||||| ||||||||||||||| | |||   |     
T  6781247 tttttgtaaagaaggaagatgttgaggcag---ggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaaggaaaccttacac---at 6781154  T
Q  140 aaccattcctcccaattgaccatatcctccaatttcaaaacttcaagggac 190  Q
    | |||||||||||| |||||||||||||| ||| |||||  ||||||||||    
T  6781153 atccattcctcccagttgaccatatcctcaaatctcaaatattcaagggac 6781103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 6781547 - 6781497
Alignment:
Q  19 gttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcag 69  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  6781547 gttgcaatctctaatctccagtttctgtaaagaaggaaggtgttgtggcag 6781497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 242
Target Start/End: Complemental strand, 6556013 - 6555818
Alignment:
Q  41 ttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacccttcacgacaaa 140  Q
    ||||||||||| ||||| ||||||||||  |   | ||||| ||||| || ||||||  ||||  |||||||||||||| |||||||| | |||   | |    
T  6556013 ttttgtaaagatggaagatgttgaggcaata---ctcttttcaatttaggacaattttctatataaagctctttaagcagaggaaaccttacac---ata 6555920  T
Q  141 accattcctcccaattgaccatatcctccaatttcaaaacttcaagggacaagaacggaacatgcgttaaattgttgccatgaatctcttcaccaatgat 240  Q
     |||||||||||| |||||||||||||| ||| |||||  ||||||||||  ||| ||||||   ||| |||| ||||||| || ||||||| |||||||    
T  6555919 tccattcctcccagttgaccatatcctcaaatctcaaatattcaagggacttgaatggaacaattgttgaattattgccataaaactcttcatcaatgat 6555820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 127
Target Start/End: Complemental strand, 6556153 - 6556065
Alignment:
Q  36 ccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaac 127  Q
    ||||||||||||||||||||||||||||||| ||    |||||||| |||| ||| |||||||||||   || |||||||||||||||||||    
T  6556153 ccagtttttgtaaagaaggaaggtgttgaggaag---agcccttttcaattcgggacaatttcttattaaaaactctttaagcaaaggaaac 6556065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 6932040 - 6932166
Alignment:
Q  22 gcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaa-gctctttaagcaa 120  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||    |||||||| |||| | | ||   ||||  ||||| ||||| |||||||    
T  6932040 gcaatcactaatctccagtttttgtaaagaaggaaggtgttgaggaaga---gcccttttcaattcgagccatcctcttg-agtaaagctctctaagcaa 6932135  T
Q  121 aggaaacccttcacgacaaaaccattcctcc 151  Q
    ||||||||| ||| |||| ||||||||||||    
T  6932136 aggaaacccatcaagacataaccattcctcc 6932166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 6840894 - 6840789
Alignment:
Q  19 gttgcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagc 118  Q
    ||||||||| | |||||| || |||||||||||||||||||||||||||||    |||||||| |||| ||| ||||    ||||| || ||||||||||    
T  6840894 gttgcaatcccaaatctctagattttgtaaagaaggaaggtgttgaggcag---agcccttttcaattcgggacaatcggatatagaaatctctttaagc 6840798  T
Q  119 aaaggaaac 127  Q
    |||||||||    
T  6840797 aaaggaaac 6840789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 6915557 - 6915673
Alignment:
Q  30 taatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaaccc 129  Q
    ||||||||| |||||| |||||||||||||||||||||||   ||  ||||| || ||||| |||| | |||||  |||||||| ||||||||| || |     
T  6915557 taatctccaatttttgcaaagaaggaaggtgttgaggcag---ggaacttttcaacttgggacaatgttttatacaaagctcttgaagcaaagggaaaca 6915653  T
Q  130 ttcacgacaaaaccattcct 149  Q
    |||| |||| ||||||||||    
T  6915654 ttcaagacataaccattcct 6915673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 6796337 - 6796209
Alignment:
Q  22 gcaatctctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaa 121  Q
    |||||| | ||||| || ||| ||||||||||||||||||||||| |||||| |||||||||| |||   |||    ||| || || |||||||||||||    
T  6796337 gcaatcaccaatcttcattttctgtaaagaaggaaggtgttgaggaagcaagaccctttttaagttgtaacaaacatttacagaaatctctttaagcaaa 6796238  T
Q  122 ggaaacccttcacgacaaaaccattcctc 150  Q
    |||||| || || | || |||||||||||    
T  6796237 ggaaactctccagggcataaccattcctc 6796209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 8588275 - 8588394
Alignment:
Q  40 tttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacccttcacgacaa 139  Q
    ||||||||||||||||||||||||||   |||| |||||||| ||||  || || |  ||||||   |||| |||||||||||||||||||| | | ||     
T  8588275 tttttgtaaagaaggaaggtgttgag---gcaaagcccttttcaattcaggacattcacttataaatagctttttaagcaaaggaaacccttgaaggcat 8588371  T
Q  140 aaccattcctcccaattgaccat 162  Q
    | |||||||||||||||| ||||    
T  8588372 atccattcctcccaattgtccat 8588394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 6521846 - 6521808
Alignment:
Q  31 aatctccagtttttgtaaagaaggaaggtgttgaggcag 69  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  6521846 aatctccagtttttgtaaagaaggaaggtgttgatgcag 6521808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 6522521 - 6522483
Alignment:
Q  31 aatctccagtttttgtaaagaaggaaggtgttgaggcag 69  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  6522521 aatctccagtttttgtaaagaaggaaggtgttgatgcag 6522483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 6522791 - 6522753
Alignment:
Q  31 aatctccagtttttgtaaagaaggaaggtgttgaggcag 69  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  6522791 aatctccagtttttgtaaagaaggaaggtgttgatgcag 6522753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 6723652 - 6723536
Alignment:
Q  30 taatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaaccc 129  Q
    ||||||||| |||||| || ||||||||||||||||||||   ||  ||||| || ||||| |||| | |||||  ||||||||  |||||||| || ||    
T  6723652 taatctccaatttttgcaatgaaggaaggtgttgaggcag---ggaacttttcaacttgggacaatgttttatacaaagctcttgtagcaaagggaaacc 6723556  T
Q  130 ttcacgacaaaaccattcct 149  Q
    |||| |||| ||||||||||    
T  6723555 ttcaagacataaccattcct 6723536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 6880972 - 6881088
Alignment:
Q  30 taatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaaccc 129  Q
    ||||||||| |||||| |||||||| ||||||||||| ||   ||| ||||| || ||||| |||| | |||||  ||||| || ||||||||| || ||    
T  6880972 taatctccaatttttgcaaagaagggaggtgttgaggaag---ggcacttttcaacttgggacaatgttttatacaaagcttttgaagcaaagggaaacc 6881068  T
Q  130 ttcacgacaaaaccattcct 149  Q
    |||| |||| ||||||||||    
T  6881069 ttcaagacataaccattcct 6881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 187
Target Start/End: Complemental strand, 4390440 - 4390336
Alignment:
Q  83 aatttggggcaatttcttatagtaagctctttaagcaaaggaaacccttcacgacaaaaccattcctcccaattgaccatatcctccaatttcaaaactt 182  Q
    ||||| || ||||| | ||||| |||||||||||||||||| || ||||||  ||| |||||||||| |||||||  ||| ||||| |||  ||||| ||    
T  4390440 aattttggacaattacgtatagaaagctctttaagcaaagggaaaccttcaacacataaccattccttccaattggacatgtcctcaaatcgcaaaattt 4390341  T
Q  183 caagg 187  Q
    |||||    
T  4390340 caagg 4390336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 6840603 - 6840516
Alignment:
Q  37 cagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaac 127  Q
    ||||||||||||||||||||||||||| |||||    |||||||| |||||||| ||||    ||||  || |||||||||||||||||||    
T  6840603 cagtttttgtaaagaaggaaggtgttgtggcag---agcccttttcaatttgggacaatcgaatatataaatctctttaagcaaaggaaac 6840516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 7748458 - 7748497
Alignment:
Q  30 taatctccagtttttgtaaagaaggaaggtgttgaggcag 69  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  7748458 taatctccaatttttgcaaagaaggaaggtgttgaggcag 7748497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 6236181 - 6236293
Alignment:
Q  30 taatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaaccc 129  Q
    ||||||||| |||||| ||| ||||||||| |||||||||   | | ||||| || ||||| |||| | |||||  |||||||||||| ||||| || ||    
T  6236181 taatctccaatttttgcaaacaaggaaggtattgaggcag---gtcacttttcaacttgggacaatgttttatacaaagctctttaagaaaagggaaacc 6236277  T
Q  130 ttcacgacaaaaccat 145  Q
    | ||||||| ||||||    
T  6236278 tccacgacataaccat 6236293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 5248683 - 5248723
Alignment:
Q  83 aatttggggcaatttcttatagtaagctctttaagcaaagg 123  Q
    |||||||| ||||||||||||| ||||| ||||||||||||    
T  5248683 aatttgggacaatttcttatagaaagctgtttaagcaaagg 5248723  T

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Target: scaffold0958 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 1370 - 1249
Alignment:
Q  29 ctaatctccagtttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacc 128  Q
    ||||| |||| | |||||||||||||||||||| |||| ||   ||||||||| ||| || | |||| |||||||| ||| | |||||||||||||||||    
T  1370 ctaatatccaatatttgtaaagaaggaaggtgtcgaggtag---ggcccttttcaatatgcgacaatatcttatagaaagatttttaagcaaaggaaacc 1274  T
Q  129 cttcacgacaaaaccattcctccca 153  Q
    ||||| ||||| ||||||| |||||    
T  1273 cttcaagacaataccattcttccca 1249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 242
Target Start/End: Complemental strand, 9062 - 8866
Alignment:
Q  40 tttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacccttcacgacaa 139  Q
    |||||||||||||||||| |||||||||||   ||  ||||| ||||| || ||||||  ||||  |||||||||||||| |||||||| | |   |||     
T  9062 tttttgtaaagaaggaagatgttgaggcag---ggtgcttttcaatttaggacaattttctatataaagctctttaagcagaggaaaccttac---acat 8969  T
Q  140 aaccattcctcccaattgaccatatcctccaatttcaaaacttcaagggacaagaacggaacatgcgttaaattgttgccatgaatctcttcaccaatga 239  Q
    | |||||||||||| |||||||||||| | ||| |||||  ||||||||||  ||| ||||||   ||| |||| ||||||| ||  |||||| ||||||    
T  8968 atccattcctcccagttgaccatatccacaaatctcaaatattcaagggacttgaatggaacaattgttgaattattgccataaaattcttcatcaatga 8869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 151
Target Start/End: Complemental strand, 9332 - 9224
Alignment:
Q  40 tttttgtaaagaaggaaggtgttgaggcagcaaggccctttttaatttggggcaatttcttatagtaagctctttaagcaaaggaaacccttcacgacaa 139  Q
    |||||||||||||||||||||||| |||||    |||||||| |||| ||| |||||   ||||| || ||| ||||||||||||||| || || | ||     
T  9332 tttttgtaaagaaggaaggtgttgtggcag---agcccttttcaattcgggacaattggatatagaaaactcgttaagcaaaggaaactctccaaggcat 9236  T
Q  140 aaccattcctcc 151  Q
    ||||||||||||    
T  9235 aaccattcctcc 9224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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