View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15686_low_12 (Length: 251)
Name: NF15686_low_12
Description: NF15686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15686_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 35328430 - 35328223
Alignment:
| Q |
29 |
ttagaataatgaattgggagtttctgtaacttattgaaattgtgaagatcaattaacttcctctgatcacnnnnnnnnnggataatgtcactctcttctc |
128 |
Q |
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| T |
35328430 |
ttagaataatgaattgggagtttctgtaacttattgaaattgtgaatatcaattaacttcctctgatcactttttttt-ggataatgtcactctcttctc |
35328332 |
T |
|
| Q |
129 |
taaataggagtattttgaattattgaagcatatcatccaagagcaagagaggagagca--ggtgtgtgatttcacttggttgagattctcatctagcatc |
226 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35328331 |
taaatacgagtattttgaattattgaagcatatcatccaagagcaagagaggagagcaagtgtgtgtgatttcacttggttgagattctcatctagcatc |
35328232 |
T |
|
| Q |
227 |
tagcgagtg |
235 |
Q |
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||||||||| |
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| T |
35328231 |
tagcgagtg |
35328223 |
T |
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