View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15686_low_14 (Length: 238)
Name: NF15686_low_14
Description: NF15686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15686_low_14 |
 | |
|
| [»] chr6 (24 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 24)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 26636175 - 26635955
Alignment:
| Q |
18 |
aatcacatatatgtattgatatataatattgcaattaaaattgttttaactaacaatgacctaattgtttactatatgatagaaaaatagaaaacatgta |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26636175 |
aatcacgtatatgtattgatatataatattgcaattaaaattgttttaactaacaatgacctaattgtttactatatgatagaaaaatagaaaacattta |
26636076 |
T |
|
| Q |
118 |
ggggagggtggtggggtaaaacaagatataaataaaaaagggtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttcc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26636075 |
ggggagggtggtggggtaaaacaagatataaataaaaaagggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttcc |
26635976 |
T |
|
| Q |
218 |
atttcagcaaccgctccatgt |
238 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
26635975 |
atttcagcaaccactccatgt |
26635955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 26742141 - 26741921
Alignment:
| Q |
18 |
aatcacatatatgtattgatatataatattgcaattaaaattgttttaactaacaatgacctaattgtttactatatgatagaaaaatagaaaacatgta |
117 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
26742141 |
aatcacgtatatgtattgatatataatattgcaattaaaattgttttaactaacaatgacctaattgtttactatatgatagaaaaatagaaaacattta |
26742042 |
T |
|
| Q |
118 |
ggggagggtggtggggtaaaacaagatataaataaaaaagggtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttcc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26742041 |
ggggagggtggtggggtaaaacaagatataaataaaaaagggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttcc |
26741942 |
T |
|
| Q |
218 |
atttcagcaaccgctccatgt |
238 |
Q |
| |
|
|||||||||||| |||||||| |
|
|
| T |
26741941 |
atttcagcaaccactccatgt |
26741921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 26959655 - 26959431
Alignment:
| Q |
18 |
aatcacatatatgtattgatatata----atattgcaattaaaattgttttaactaacaatgacctaattgtttactatatgatagaaaaatagaaaaca |
113 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||| |
|
|
| T |
26959655 |
aatcacatatatgtattgatatatatataatattgcaattcaaattgttttaaccaacaatgacctaattttttactatatgattgagaaatagaaaaca |
26959556 |
T |
|
| Q |
114 |
tgtaggggagggtggtggggtaaaacaagatataaataaaaaagggtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttc |
213 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26959555 |
tataggggagggtggtggggtaaaacaagatataaataaagaagggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttc |
26959456 |
T |
|
| Q |
214 |
ttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
26959455 |
ttccatttcagcaaccgctccatgt |
26959431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 127 - 235
Target Start/End: Complemental strand, 26975428 - 26975320
Alignment:
| Q |
127 |
ggtggggtaaaacaagatataaataaaaaagggtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagca |
226 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
26975428 |
ggtggggtaaaacaagattgaaataaagaagggtacccaagattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttaagca |
26975329 |
T |
|
| Q |
227 |
accgctcca |
235 |
Q |
| |
|
||||||||| |
|
|
| T |
26975328 |
accgctcca |
26975320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 26950028 - 26949926
Alignment:
| Q |
136 |
aaacaagatataaataaaaaagggtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctcca |
235 |
Q |
| |
|
||||||||| |||| || |||||||||||||||||||||||| ||||||||||| |||| ||| ||| || ||| |||||||||||||||||||||||| |
|
|
| T |
26950028 |
aaacaagattaaaatgaagaagggtacccaagattgaaatggtagccagataagtcagcaactttgttcagagctatcttccatttcagcaaccgctcca |
26949929 |
T |
|
| Q |
236 |
tgt |
238 |
Q |
| |
|
||| |
|
|
| T |
26949928 |
tgt |
26949926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 26849006 - 26848926
Alignment:
| Q |
157 |
gggtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatg |
237 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| ||||||||| |
|
|
| T |
26849006 |
gggtacccaaaattgaaatggtggccagataagttagcagcatggttaagagctttcttccatttacgcaaacgctccatg |
26848926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 25072026 - 25071924
Alignment:
| Q |
136 |
aaacaagatataaataaaaaagggtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctcca |
235 |
Q |
| |
|
||||||||| ||||||| | || ||||| |||||||||| || ||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
25072026 |
aaacaagattgaaataaagatggttacccttgattgaaatgatgtccagataagttagcagcttcgttaagagctttcttccatgtcagcaaccgctcca |
25071927 |
T |
|
| Q |
236 |
tgt |
238 |
Q |
| |
|
||| |
|
|
| T |
25071926 |
tgt |
25071924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 26937450 - 26937371
Alignment:
| Q |
159 |
gtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || ||||||||||| ||| ||||||||||| |||||| |||||||| |
|
|
| T |
26937450 |
gtacccaagattgaaatggtggccagacaagtttgccgcttggttaagagctatcttccatttccgcaacctctccatgt |
26937371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 27214743 - 27214685
Alignment:
| Q |
180 |
gccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
27214743 |
gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgt |
27214685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 27234485 - 27234543
Alignment:
| Q |
180 |
gccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
27234485 |
gccagataagttagcagcttggttaagagctatcttccatttctgcaaccgctccatgt |
27234543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 26617956 - 26617887
Alignment:
| Q |
169 |
ttgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
|||||||| | ||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
26617956 |
ttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgt |
26617887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 26723884 - 26723815
Alignment:
| Q |
169 |
ttgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
|||||||| | ||||||||||||| |||||||||||| ||| ||||||||||| ||||||||||||||| |
|
|
| T |
26723884 |
ttgaaatgatagccagataagttataagcttggttaagagctatcttccatttctgcaaccgctccatgt |
26723815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 238
Target Start/End: Original strand, 28297554 - 28297635
Alignment:
| Q |
157 |
gggtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||| ||| |||| || ||||||||||| |||||| |||||||| |
|
|
| T |
28297554 |
gggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgt |
28297635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 28514519 - 28514438
Alignment:
| Q |
157 |
gggtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||| ||| |||| || ||||||||||| |||||| |||||||| |
|
|
| T |
28514519 |
gggtacctaggattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatgt |
28514438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 238
Target Start/End: Complemental strand, 24715929 - 24715850
Alignment:
| Q |
159 |
gtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||||||| |||| |||||||||| |||||| ||| |||| ||||| ||| ||||| ||||||||||||| ||||||| |
|
|
| T |
24715929 |
gtacccaagcttgacatggtggccacataagtcagcggcttttttaagagctgtcttctatttcagcaaccggtccatgt |
24715850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 26811832 - 26811774
Alignment:
| Q |
180 |
gccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||||||||||| || |||||||||| ||| ||||||||||| ||||||| ||||||| |
|
|
| T |
26811832 |
gccagataagttaccaacttggttaagagctatcttccatttctgcaaccgatccatgt |
26811774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 237
Target Start/End: Complemental strand, 28185702 - 28185632
Alignment:
| Q |
167 |
gattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatg |
237 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||| |||| || ||||||||||| |||||| ||||||| |
|
|
| T |
28185702 |
gattgaaatggtggccagagaagttagcagtttgagtaagagcactcttccatttctgcaacctctccatg |
28185632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 28139887 - 28139838
Alignment:
| Q |
157 |
gggtacccaagattgaaatggtggccagataagttagcagcttggttaag |
206 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
28139887 |
gggtacccaaaattgaaatggtggccagaaaagttagctgctttgttaag |
28139838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 114
Target Start/End: Complemental strand, 26849212 - 26849138
Alignment:
| Q |
39 |
tataatattgcaattaaaattgttttaactaacaatgacctaattgtttactatatgatagaaaaatagaaaacat |
114 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||| |||||| ||| |||||||| || ||||||| |||||| |
|
|
| T |
26849212 |
tatattattgcaattaaaattgtttcaacatacaatgagctaattcttt-ctatatgacaggaaaataggaaacat |
26849138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Original strand, 28098199 - 28098262
Alignment:
| Q |
158 |
ggtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccattt |
221 |
Q |
| |
|
|||||| | |||||||||||||||| || |||||||| ||||||||||| || |||||||||| |
|
|
| T |
28098199 |
ggtacctaggattgaaatggtggccggacaagttagctgcttggttaagagccatcttccattt |
28098262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 27337921 - 27337987
Alignment:
| Q |
172 |
aaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||||||||| || ||||||||||||||| |||| || ||||||||||| ||||| |||||||| |
|
|
| T |
27337921 |
aaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgt |
27337987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 27398661 - 27398727
Alignment:
| Q |
172 |
aaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||||||||| || ||||||||||||||| |||| || ||||||||||| ||||| |||||||| |
|
|
| T |
27398661 |
aaatggtggccggagaagttagcagcttgggtaagagccatcttccatttcttcaacctctccatgt |
27398727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 28325820 - 28325743
Alignment:
| Q |
160 |
tacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatg |
237 |
Q |
| |
|
|||||| || ||||||||||||| || |||||||||| ||| |||| || ||||||||||| |||||| ||||||| |
|
|
| T |
28325820 |
tacccaggactgaaatggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatg |
28325743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 27664999 - 27665039
Alignment:
| Q |
198 |
ttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||| ||| |||| |||||||||||||||||||||||||| |
|
|
| T |
27664999 |
ttggtgaagagcttccttccatttcagcaaccgctccatgt |
27665039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 17993535 - 17993606
Alignment:
| Q |
167 |
gattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
17993535 |
gattgaaatggtggccagataagttagcagcttggttaagagctttcttccatttcaacaaccgctccatgt |
17993606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 3280049 - 3279968
Alignment:
| Q |
157 |
gggtacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatgt |
238 |
Q |
| |
|
||||||| | |||| ||||||||||| || |||||||| ||||||||||| || |||||||||| |||||| || ||||| |
|
|
| T |
3280049 |
gggtacctaggattaaaatggtggccggacaagttagctgcttggttaagagccatcttccatttatgcaacctcttcatgt |
3279968 |
T |
|
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Target: scaffold0038 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 237
Target Start/End: Complemental strand, 117135 - 117058
Alignment:
| Q |
160 |
tacccaagattgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaaccgctccatg |
237 |
Q |
| |
|
|||||| || ||||||||||||| || |||||||||| ||| |||| || ||||||||||| |||||| ||||||| |
|
|
| T |
117135 |
tacccaggactgaaatggtggcctgagaagttagcagtttgagtaagagccatcttccatttctgcaacctctccatg |
117058 |
T |
|
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Target: scaffold0019 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 58134 - 58195
Alignment:
| Q |
168 |
attgaaatggtggccagataagttagcagcttggttaagtgctttcttccatttcagcaacc |
229 |
Q |
| |
|
|||||||||||||||||| |||||||||| || |||| ||| ||||||||||| |||||| |
|
|
| T |
58134 |
attgaaatggtggccagagaagttagcagtctgagtaagagctgtcttccatttctgcaacc |
58195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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