View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15686_low_4 (Length: 460)
Name: NF15686_low_4
Description: NF15686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15686_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 49104790 - 49105228
Alignment:
| Q |
1 |
acaatccattaacaagaattattattgaattaataatacacttccccaattgttgcgcatttatttacttcgataaaatgtctttttaatgtgggactca |
100 |
Q |
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| T |
49104790 |
acaatccattaacaagaattattattgaattaataatacacttccccaattgttgcgcatttatttacttcgataaaatgtctttttaatgtgggactca |
49104889 |
T |
|
| Q |
101 |
taacacaatattcggtgacagtatgaaaacgggnnnnnnnnnnn-ctaatacctgatctataattggaagatatccaccaacatttgggagtatggtacc |
199 |
Q |
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| T |
49104890 |
taacacaatattcggtgacagtatgaaaacgggaagaaaaaaaaactattacctgatctataattggaagatatccaccaacatttgggagtatggtacc |
49104989 |
T |
|
| Q |
200 |
atttggtagtattccaccctctcctccaactccaacagcaatatcatctctccccatcatgtaaagtaagtcataaatttggttaacaacatgacctgca |
299 |
Q |
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| T |
49104990 |
atttggtagtattccaccctctcctccaactccaacagcaatatcatctctccccatcatgtaaagtaagtcataaatttggttaacaacatgacctgca |
49105089 |
T |
|
| Q |
300 |
ctactccatgtattggcattgatggtcactgcctgcacattgagcataaaggagaaaatataagaggccaaaatcgttcagaaaatagtacaggccaaaa |
399 |
Q |
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| T |
49105090 |
ctactccatgtattggcattgatggtcactgcctgcacattgagcataaaggagaaaatataagaggccaaaatcgttcagaaaatagtacaggccaaaa |
49105189 |
T |
|
| Q |
400 |
tcacacaattgtgacattggatcaaatatgcaattaagc |
438 |
Q |
| |
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| T |
49105190 |
tcacacaattgtgacattggatcaaatatgcaattaagc |
49105228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 150 - 336
Target Start/End: Original strand, 18133629 - 18133815
Alignment:
| Q |
150 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctc |
249 |
Q |
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| T |
18133629 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctcaccaccaattccaacagcaacatcatctc |
18133728 |
T |
|
| Q |
250 |
tccccatcatgtaaagtaagtcataaatttggttaacaacatgacctgcactactccatgtattggcattgatggtcactgcctgca |
336 |
Q |
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| T |
18133729 |
tccccatcatgtacagcaagtcataaatttggttcacagcatgccctgcactagtccagctatttgcactgatggtcactgcctgca |
18133815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 150 - 336
Target Start/End: Original strand, 49120839 - 49121025
Alignment:
| Q |
150 |
acctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctc |
249 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||| ||||||||||| |||||||| |
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| T |
49120839 |
acctgttctataattggtagatatccaccaacatttgggagtatggtaccatttgacagtattccaccctcaccaccaattccaacagcaacatcatctc |
49120938 |
T |
|
| Q |
250 |
tccccatcatgtaaagtaagtcataaatttggttaacaacatgacctgcactactccatgtattggcattgatggtcactgcctgca |
336 |
Q |
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| T |
49120939 |
tccccatcatgtacagcaagtcataaatttggttcacagcatgccctgcactagtccagctatttgcactgatggtcactgcctgca |
49121025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 148 - 274
Target Start/End: Complemental strand, 6955108 - 6954982
Alignment:
| Q |
148 |
atacctgatctataattggaagatatccaccaacatttgggagtatggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatc |
247 |
Q |
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||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| || |||||||| || ||||| |||||||||||||| ||||| |
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| T |
6955108 |
atacctgttctataattggaagatatccaccaacattaggaagtatggtaccatttgggagaattccaccttcacctcccactccaacagcaatgtcatc |
6955009 |
T |
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| Q |
248 |
tctccccatcatgtaaagtaagtcata |
274 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
6955008 |
tctccccatcatgtaaagtatgtcata |
6954982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 193 - 274
Target Start/End: Complemental strand, 6964791 - 6964710
Alignment:
| Q |
193 |
tggtaccatttggtagtattccaccctctcctccaactccaacagcaatatcatctctccccatcatgtaaagtaagtcata |
274 |
Q |
| |
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| T |
6964791 |
tggtaccatttgggagaattccaccttcacctcccactccaacagcaatgtcatctctccccatcatgtaaagtatgtcata |
6964710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 6965232 - 6965185
Alignment:
| Q |
148 |
atacctgatctataattggaagatatccaccaacatttgggagtatgg |
195 |
Q |
| |
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||||||| || || |||||||||||||||||||||||||| ||||||| |
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| T |
6965232 |
atacctgttcaatgattggaagatatccaccaacatttggaagtatgg |
6965185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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