View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15686_low_7 (Length: 359)
Name: NF15686_low_7
Description: NF15686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15686_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 301
Target Start/End: Complemental strand, 8338246 - 8337965
Alignment:
| Q |
19 |
ttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtttaggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagat |
118 |
Q |
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| T |
8338246 |
ttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtttaggatggttgagaatgaggtgtt-gtttggtgtgtaaatgacttcagagat |
8338148 |
T |
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| Q |
119 |
aggggaatttgaagtttgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaag |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8338147 |
aggggaatttgaagtttgagaaaaacaattgagaaaagtttaaatggatgattgtgatgttgttgttgaaatagacataaaaattgttaaggttgtcaag |
8338048 |
T |
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| Q |
219 |
agaaaagacaatgtacacattgtctcagttgtactgataacaatgtggtttgttactttgatgtgcatctctttgttgcactc |
301 |
Q |
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| T |
8338047 |
agaaaagacaatgtacacattgtctcagttgtactaataacaatgtggtttgttactttgatgtgcatctctttgttgcactc |
8337965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 28 - 230
Target Start/End: Complemental strand, 21482347 - 21482146
Alignment:
| Q |
28 |
tgtttttgtttcaaatctcttgttatgtattttcatgtttaggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggggaatt |
127 |
Q |
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|||| |||||| |||||||||||| |||||||||||||| |||||| ||||||||||| | || |||||| |||||||||| |||||||||| |||||| |
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| T |
21482347 |
tgttgttgttttaaatctcttgttttgtattttcatgttgaggatggttgagaatgagatatt-gtttggagtgtaaatgatatcagagatagaggaatt |
21482249 |
T |
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| Q |
128 |
tgaagtttgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagagaaaagac |
227 |
Q |
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| T |
21482248 |
caaagattgagaaaagcaattgagaaaattttgaaagggtgattgtgatgttgttgttgaaatagacatgacaattgttaaagttatgaagagaaaagac |
21482149 |
T |
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| Q |
228 |
aat |
230 |
Q |
| |
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||| |
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| T |
21482148 |
aat |
21482146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 36100362 - 36100082
Alignment:
| Q |
19 |
ttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtttaggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcaga-ga |
117 |
Q |
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|||||||| |||| ||||| |||||||||||||||||||||||| ||||||||| |||||||||||| |||| ||||| |||||| | ||||| || |
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| T |
36100362 |
ttttggtgatgttgctgttttaaatctcttgttatgtattttcatatttaggatggttgagaatgaggggttt-tttggaccgtaaataatgtcagatga |
36100264 |
T |
|
| Q |
118 |
--taggggaatttgaagtttgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtc |
215 |
Q |
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|| || | ||| ||| ||||||||||||||| | ||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36100263 |
attaaaagattgagaataatgataaaaacaattgagaagattttgaatgggtgatagtgatgttgttgttgaaacagacatgaaaattgttaaggttgtc |
36100164 |
T |
|
| Q |
216 |
aagagaaaagacaatgtacacattgtctcagttgtactgataacaatgtggtttgttactttgatgtgcatctctttgttgc |
297 |
Q |
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| T |
36100163 |
aagagaaaaaacaacgctctcattgtttccatggtactaacagaaacgtggtttgttacttggttgtgcatctcattgttgc |
36100082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 41 - 229
Target Start/End: Original strand, 36090737 - 36090933
Alignment:
| Q |
41 |
aatctcttgttatgtattttcatgtttaggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggggaatttgaagtttgag-- |
138 |
Q |
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|||||||||| ||||||||||||||| | |||| || ||||||||||||| |||| | |||||||||| ||||| | | ||||||| ||| ||||| |
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| T |
36090737 |
aatctcttgtaatgtattttcatgttgaagatggttaagaatgaggtgtt-gttttgagtgtaaatgatgtcagaaacatgggaattcaaagattgagaa |
36090835 |
T |
|
| Q |
139 |
-------aaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagagaaaagacaa |
229 |
Q |
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|||||||| |||||||| ||| ||||| ||||||||||||||||| |||| ||||| || || ||||| ||||||||||||||| |||| |
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| T |
36090836 |
taatgagaaaaacaagtgagaaaattttaaatgggagattgtgatgttgttgtagaaacagacaagacaactgttatagttgtcaagagaaaaaacaa |
36090933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 36107622 - 36107515
Alignment:
| Q |
18 |
gttttggtgttgtttttgtttcaaatctcttgttatgtattttcatgtttaggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagaga |
117 |
Q |
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|||||||||||||| ||||| ||||||||| || |||||||||||||| ||||| |||||||||||| ||||||||||||||| | |||||||||| |
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| T |
36107622 |
gttttggtgttgttgctgttttaaatctcttattttgtattttcatgttgaggatagttgagaatgagg-cattgtttggtgtgtaagtaacttcagaga |
36107524 |
T |
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| Q |
118 |
taggggaat |
126 |
Q |
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| |||||| |
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| T |
36107523 |
caagggaat |
36107515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 34972148 - 34972199
Alignment:
| Q |
135 |
tgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttg |
186 |
Q |
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||||||||||| || |||||| ||||||||| |||||||||||||||||||| |
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| T |
34972148 |
tgagaaaaacagttaagaaaattttgaatgggtgattgtgatgttgttgttg |
34972199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 34972081 - 34972120
Alignment:
| Q |
76 |
tgagaatgaggtgtttgtttggtgtgtaaatgacttcagag |
116 |
Q |
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| T |
34972081 |
tgagaatgaggtatt-gtttggtgtgtaaatgacttcagag |
34972120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 230
Target Start/End: Complemental strand, 6838378 - 6838181
Alignment:
| Q |
23 |
ggtgttgtttttgtttcaaatctcttgttatgtattttcatgtttaggatgtttgagaatgaggtgtttgtttggtgtgtaaatgacttcagagataggg |
122 |
Q |
| |
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||||||||| ||||| ||||||||| || |||||||| ||||| ||||| |||||||||||||| ||||||||||||||| | |||||||||| | || |
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| T |
6838378 |
ggtgttgttgctgttttaaatctcttattttgtatttttatgttgaggatagttgagaatgaggtg-ttgtttggtgtgtaagtaacttcagagacaagg |
6838280 |
T |
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| Q |
123 |
gaatttgaagtttgagaaaaacaattgagaaaagtttgaatggatgattgtgatgttgttgttgaaatagacatgaaaattgttaaggttgtcaagagaa |
222 |
Q |
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||| || |||| |||||| | |||| |||||| | ||||| || ||||||||||||| |||||| || |||||||||||||| || |||| |
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| T |
6838279 |
gaa---------tgtgaaagacaatttataaaatgttgaataggtgattttgctgttgttgttgaattagacaagacaattgttaaggttgccataagaa |
6838189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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