View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15687_high_7 (Length: 319)
Name: NF15687_high_7
Description: NF15687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15687_high_7 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 1482000 - 1481685
Alignment:
| Q |
1 |
agcatgacgatgataatgttgacctagactttatccaccttgatagcagtggattgtattatcaggataatgtgacagttatgagtaaaggtcaaaacat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1482000 |
agcatgacgatgataatgttgacctagactttatccaccttgatagcagtggattgtattatcaggataatgtgacagttatgagtaaaggtcaaaacat |
1481901 |
T |
|
| Q |
101 |
ggagttattaaaaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactc |
200 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
1481900 |
ggagttagtaaaaattctgacaat--tcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggatctgaaagcactc |
1481803 |
T |
|
| Q |
201 |
catgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaattactct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
1481802 |
catgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagtt-agagtccttagacctctcaaataactct |
1481704 |
T |
|
| Q |
301 |
ttgttcggtaaaattcctg |
319 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
1481703 |
ttgttcggtaaaattcctg |
1481685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 60 - 299
Target Start/End: Complemental strand, 5551953 - 5551715
Alignment:
| Q |
60 |
tatcaggataatgtgacagttatgagtaaaggtcaaaacatggagttattaaaaattctgacaatcttcacaaccattgatttctcatccaatcactttg |
159 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||| | ||| |||| | |||||||| ||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
5551953 |
tatcaggatagtgtgacagtttctattaaaggtcagcaaatgaagtttgttaaaattctagcaatcttcacagccattgatttctcatccaatcattttg |
5551854 |
T |
|
| Q |
160 |
aaggattgataccagaggatctaatggaactgaaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaa |
259 |
Q |
| |
|
||||| |||||| ||| ||| |||||| | |||||| ||||||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||||| |
|
|
| T |
5551853 |
aaggaccaataccacaggttctgatggaattcaaagcaatccatgttctcaacttttcgaacaatggtatctccggtgaaatcccatcaactattgggaa |
5551754 |
T |
|
| Q |
260 |
cctgaaacagttaagagtccttagacctctcaaattactc |
299 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| |||| |
|
|
| T |
5551753 |
cctgaaacagtt-agagtcattagacctctcaaataactc |
5551715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 57 - 317
Target Start/End: Complemental strand, 5557721 - 5557462
Alignment:
| Q |
57 |
tattatcaggataatgtgacagttatgagtaaaggtcaaaacatggagttattaaaaattctgacaatcttcacaaccattgatttctcatccaatcact |
156 |
Q |
| |
|
||||| ||||||| || ||||||| | |||||||| | | |||||||| | |||||||| ||||| || ||||||||||| |||||||||||||| | |
|
|
| T |
5557721 |
tattaccaggatagtgcgacagtttccaataaaggtcgacaaatggagttggttaaaattctaacaatatttacaaccattgacttctcatccaatcatt |
5557622 |
T |
|
| Q |
157 |
ttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgg |
256 |
Q |
| |
|
|||||||| |||||||| | |||||||| | |||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||| |
|
|
| T |
5557621 |
ttgaaggaccaataccagatgtgctaatggacttcaaagcaatccatgttctcaacttttcaaacaatgctctctctggtgaaatcccatcaactattgg |
5557522 |
T |
|
| Q |
257 |
gaacctgaaacagttaagagtccttagacctctcaaattactctttgttcggtaaaattcc |
317 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |||| ||| | ||| ||||||| |
|
|
| T |
5557521 |
gaacctgaaacagtt-ggagtccttggacctctcaaataactcattggttggtgaaattcc |
5557462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 86 - 318
Target Start/End: Complemental strand, 5612293 - 5612062
Alignment:
| Q |
86 |
taaaggtcaaaacatggagttattaaaaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatg |
185 |
Q |
| |
|
|||||||||| | ||| |||| | |||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||||||| || ||| |
|
|
| T |
5612293 |
taaaggtcaagagatgaagttggttaaaattctaaaaatcttcatggccattgatttctcatccaatcactttgaaggaccaataccagaggggctgatg |
5612194 |
T |
|
| Q |
186 |
gaactgaaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagac |
285 |
Q |
| |
|
|| | |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
5612193 |
aaattcaaagcaatccatgttctcaacttttcaaacaatgctttctcttgtgaaatcccatcaactattgggaacctgaaacagtt-agagtccttggac |
5612095 |
T |
|
| Q |
286 |
ctctcaaattactctttgttcggtaaaattcct |
318 |
Q |
| |
|
||||||| |||| ||| | ||| |||||||| |
|
|
| T |
5612094 |
ttctcaaacaactccttggttggtgaaattcct |
5612062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 111 - 318
Target Start/End: Original strand, 5887743 - 5887949
Alignment:
| Q |
111 |
aaaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctca |
210 |
Q |
| |
|
|||||||| |||||||| ||| |||||||||||||||||||||| ||||||||| |||||||| | |||||| || | |||||||||| |||| ||| |
|
|
| T |
5887743 |
aaaattctaacaatctttacagccattgatttctcatccaatcattttgaaggacaaataccagacgtgctaatgaaatttaaagcactccttgttttca |
5887842 |
T |
|
| Q |
211 |
acttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaattactctttgttcggta |
310 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||| ||||||| |||||||||||||| ||||||||| ||||||||||| |||| ||| | ||| |
|
|
| T |
5887843 |
acttttcaaacaatgatttttctggtgaaatcccattaactattgcaaacctgaaacagtt-agagtccttggacctctcaaacaactccttggttggtg |
5887941 |
T |
|
| Q |
311 |
aaattcct |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
5887942 |
aaattcct |
5887949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 57 - 319
Target Start/End: Complemental strand, 5563506 - 5563245
Alignment:
| Q |
57 |
tattatcaggataatgtgacagttatgagtaaaggtcaaaacatggagttattaaaaattctgacaatcttcacaaccattgatttctcatccaatcact |
156 |
Q |
| |
|
||||||||||||| | |||||||| | |||||||||| | || ||||| | |||||| | | |||||||||| |||||||||| ||||||||||| | |
|
|
| T |
5563506 |
tattatcaggatagtatgacagtttccattaaaggtcaacagatagagttggttaaaattttaaaaatcttcacagccattgatttatcatccaatcatt |
5563407 |
T |
|
| Q |
157 |
ttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgg |
256 |
Q |
| |
|
|||||||| ||||| | | || ||||| | |||||||| |||||||||||||||||||||||||| |||| |||||||| ||||| ||||| || |
|
|
| T |
5563406 |
ttgaaggaccactaccaaatgtgctgatggacttcaaagcactttatgttctcaacttttcaaacaatgctctctctggtgaaattccatcaactatcgg |
5563307 |
T |
|
| Q |
257 |
gaacctgaaacagttaagagtccttagacctctcaaattactctttgttcggtaaaattcctg |
319 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| ||||| || | ||||| ||||||| |
|
|
| T |
5563306 |
gaacctgaaacagtt-ggagtccttggacctctcaaataactctctggttggtaagattcctg |
5563245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 110 - 303
Target Start/End: Original strand, 5849520 - 5849712
Alignment:
| Q |
110 |
aaaaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctc |
209 |
Q |
| |
|
||||||||| | |||||| ||| |||||||||||||||||||||| || |||||| ||||||||| |||||| || | || ||| ||||||||||| |
|
|
| T |
5849520 |
aaaaattctaaaaatctttacagccattgatttctcatccaatcatttcgaaggaccaataccagagttgctaatgaaatttaaggcaatccatgttctc |
5849619 |
T |
|
| Q |
210 |
aacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaattactctttg |
303 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||||||| ||||||| ||| |||||||| | ||||||||| |||||||||||| |||||||| |
|
|
| T |
5849620 |
aacttttcaaacaatgttttttctggtgaaatcccatcaactattgaaaacttgaaacagct-agagtccttggacctctcaaataactctttg |
5849712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 57 - 317
Target Start/End: Complemental strand, 3747703 - 3747444
Alignment:
| Q |
57 |
tattatcaggataatgtgacagttatgagtaaaggtcaaaacatggagttattaaaaattctgacaatcttcacaaccattgatttctcatccaatcact |
156 |
Q |
| |
|
|||||||| |||| |||||| ||| | |||||||||| | |||||||| | |||||||| |||||||||||| |||||||||||||||| ||||| | |
|
|
| T |
3747703 |
tattatcatgatagtgtgacggtttccaataaaggtcaagatatggagtttgttaaaattctaacaatcttcacagccattgatttctcatcgaatcatt |
3747604 |
T |
|
| Q |
157 |
ttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgg |
256 |
Q |
| |
|
|||||||| || || ||| |||||| || | |||||| ||||||||||||||||||||||||| | |||| |||||||| ||||| ||||| || |
|
|
| T |
3747603 |
ttgaaggaccaatcccgaaggtgctaatgaaattcaaagcaatccatgttctcaacttttcaaacaacaatctctctggtgaaattccatcaactatagg |
3747504 |
T |
|
| Q |
257 |
gaacctgaaacagttaagagtccttagacctctcaaattactctttgttcggtaaaattcc |
317 |
Q |
| |
|
||| |||||||||| ||||||||| |||||||||||| |||| ||| | ||| ||||||| |
|
|
| T |
3747503 |
aaacttgaaacagtt-agagtccttggacctctcaaataactcattggttggtgaaattcc |
3747444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 192 - 299
Target Start/End: Original strand, 5854577 - 5854683
Alignment:
| Q |
192 |
aaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctca |
291 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
5854577 |
aaagcagtccatgttctcaacttttcaaacaatgctttctctggtgaaatcccatcaactatcgggaacctgaaacagtt-agagtcattagacctctca |
5854675 |
T |
|
| Q |
292 |
aattactc |
299 |
Q |
| |
|
||| |||| |
|
|
| T |
5854676 |
aataactc |
5854683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 124 - 319
Target Start/End: Original strand, 5890816 - 5891010
Alignment:
| Q |
124 |
tcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaacttttcaaacaa |
223 |
Q |
| |
|
|||| ||| |||||||||||||||||||| | ||||||||| |||||||||| |||||| || | |||||| ||||||||||||||||||||||||| |
|
|
| T |
5890816 |
tctttacagccattgatttctcatccaattattttgaaggaccaataccagaggtcctaatgaaatttaaagcagtccatgttctcaacttttcaaacaa |
5890915 |
T |
|
| Q |
224 |
tgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaattactctttgttcggtaaaattcctg |
319 |
Q |
| |
|
|||||| || ||||||||||| || ||||||| | ||| ||||| | ||||||||| |||||||||||| |||||||| | ||| ||||||||| |
|
|
| T |
5890916 |
tgctttttctggtgaaatcccctccactattgcaagcctagaacagat-agagtccttggacctctcaaataactctttggttggtgaaattcctg |
5891010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 317
Target Start/End: Complemental strand, 5856857 - 5856598
Alignment:
| Q |
57 |
tattatcaggataatgtgacagttatgagtaaaggtcaaaacatggagttattaaaaattctgacaatcttcacaaccattgatttctcatccaatcact |
156 |
Q |
| |
|
||||||||||||| ||||||| || | |||||||||| | |||||||| | || ||||| |||||||||||| |||||||||| ||||||||||| | |
|
|
| T |
5856857 |
tattatcaggatagtgtgacaatttccaataaaggtcaacaaatggagttgattaagattctaacaatcttcacagccattgatttatcatccaatcatt |
5856758 |
T |
|
| Q |
157 |
ttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgg |
256 |
Q |
| |
|
||||||| |||||||| | ||| | | |||||||| |||||||||||||||||||||||| | |||| |||||||||||||| ||||||| |
|
|
| T |
5856757 |
ttgaaggtaaaataccagaagcgacgatgaacttcaaagcacttcatgttctcaacttttcaaacaattgtctctcaggtgaaatcccatcttctattgg |
5856658 |
T |
|
| Q |
257 |
gaacctgaaacagttaagagtccttagacctctcaaattactctttgttcggtaaaattcc |
317 |
Q |
| |
|
||| |||||||||| ||||| ||||||||||||||| |||||||| | ||| ||||||| |
|
|
| T |
5856657 |
aaacttgaaacagtt-ggagtcattagacctctcaaataactctttgattggtgaaattcc |
5856598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 317
Target Start/End: Original strand, 5896540 - 5896799
Alignment:
| Q |
57 |
tattatcaggataatgtgacagttatgagtaaaggtcaaaacatggagttattaaaaattctgacaatcttcacaaccattgatttctcatccaatcact |
156 |
Q |
| |
|
||||||||||||| ||||||| || | |||||||||| ||| |||| | |||||| | |||||||| ||| |||||||||||||||| ||||| | |
|
|
| T |
5896540 |
tattatcaggatagtgtgacaatttctactaaaggtcaagtgatgcagttgcttaaaattttaacaatctttacagccattgatttctcatcaaatcatt |
5896639 |
T |
|
| Q |
157 |
ttgaaggattgataccagaggatctaatggaactgaaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgg |
256 |
Q |
| |
|
| |||||| |||||| | | | |||||| | |||||| ||||| ||||||||||||| ||||||| ||||| |||||||| ||||| ||||||| |
|
|
| T |
5896640 |
tcgaaggaccaataccacatgtgttgatggaattcaaagcaatccattttctcaacttttcgaacaatggtttctatggtgaaattccatcaactattgc |
5896739 |
T |
|
| Q |
257 |
gaacctgaaacagttaagagtccttagacctctcaaattactctttgttcggtaaaattcc |
317 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||| |||||||| | ||| ||||||| |
|
|
| T |
5896740 |
aaacctgaaacaact-agagtccttggacctctcaaataactctttggttggtgaaattcc |
5896799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 294
Target Start/End: Complemental strand, 5604176 - 5603968
Alignment:
| Q |
85 |
gtaaaggtcaaaacatggagttattaaaaattctgacaatcttcacaaccattgatttctcatccaatcactttgaaggattgataccagaggatctaat |
184 |
Q |
| |
|
||||||||||| | |||||||| | |||||||| ||||| | |||| |||||||||||||||||| ||||||||| |||||| || |||| |
|
|
| T |
5604176 |
gtaaaggtcaacaaatggagttggttaaaattctaacaatttacacagtcattgatttctcatccaactcttttgaaggaccaataccaatggtggtaat |
5604077 |
T |
|
| Q |
185 |
ggaactgaaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttaga |
284 |
Q |
| |
|
||| | |||||||| |||||||||||||||||||||||| | ||| |||||||||||||| ||| ||||||||||||||||||| ||||| || || |
|
|
| T |
5604076 |
ggacttcaaagcactttatgttctcaacttttcaaacaatggtctctatggtgaaatcccatcaactgttgggaacctgaaacagtt-ggagtctttgga |
5603978 |
T |
|
| Q |
285 |
cctctcaaat |
294 |
Q |
| |
|
|||||||||| |
|
|
| T |
5603977 |
cctctcaaat |
5603968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 253359 - 253452
Alignment:
| Q |
206 |
tctcaacttttcaaacaatgctttctccggtgaaatcccatcgactattgggaacctgaaacagttaagagtccttagacctctcaaattactcttt |
302 |
Q |
| |
|
|||||||||||||||||||| | ||| || |||||||| || |||| |||||| ||||||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
253359 |
tctcaacttttcaaacaatggt--ctcaggcgaaatcccgtcttctatagggaacttgaaacaatta-gagtccttagacctctcaaataactcttt |
253452 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 43277601 - 43277546
Alignment:
| Q |
192 |
aaagcactccatgttctcaacttttcaaacaatgctttctccggtgaaatcccatc |
247 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
43277601 |
aaagcactatatgttctcaacttttcaaacaatcatttctcaggtgaaatcccatc |
43277546 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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