View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15687_high_8 (Length: 309)
Name: NF15687_high_8
Description: NF15687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15687_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 52457314 - 52457008
Alignment:
| Q |
1 |
taaggtggcaaatctacgacatgctaataaaatggttgatgaaataaggttggtggaaaattatttcaaggtttcaatctcttataaagaacacatcata |
100 |
Q |
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| T |
52457314 |
taaggtggcaaatctacgacatgctaataaaatggttgatgaaataaggttggtggaaaattatttcaaggtttcgatctcttataaagaacacatcata |
52457215 |
T |
|
| Q |
101 |
taaccatcaagtagtcgtgtatgcgtaccagagtccaaatcctcataaagaacatattattgattgagggcatgcaaagttgcgccataagtcaaaacat |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52457214 |
taaccatcaagtagtcgtgtatgcataccagagtccaaatccttataaagaacatattattgattgagggcatgcaaagttgcgccataagtcagaacat |
52457115 |
T |
|
| Q |
201 |
ttgacatgaccaacgaccttccagtttgttctaatgcattgtcaaccatgtctttcgacgtcattttcccctcaagacaggtagtagcaaacatattctt |
300 |
Q |
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|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
52457114 |
ttgacatgactaacgaccttccactttgttctaatgcattgtcaaccatgtctttcgacgccattttcccctcaagacaggtagtagcaaacatattcgg |
52457015 |
T |
|
| Q |
301 |
cgacatc |
307 |
Q |
| |
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||||||| |
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| T |
52457014 |
cgacatc |
52457008 |
T |
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