View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15687_low_2 (Length: 236)

Name: NF15687_low_2
Description: NF15687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15687_low_2
NF15687_low_2
[»] chr6 (10 HSPs)
chr6 (1-236)||(27878635-27878869)
chr6 (75-236)||(1234858-1235018)
chr6 (75-236)||(26976131-26976291)
chr6 (75-236)||(27873990-27874150)
chr6 (75-229)||(18968041-18968194)
chr6 (1-126)||(30967674-30967799)
chr6 (74-233)||(30986668-30986830)
chr6 (121-233)||(30966812-30966923)
chr6 (80-234)||(21966710-21966860)
chr6 (94-233)||(23012520-23012656)
[»] chr8 (4 HSPs)
chr8 (1-236)||(9444018-9444252)
chr8 (75-236)||(9439372-9439532)
chr8 (92-148)||(4799315-4799371)
chr8 (74-147)||(4844870-4844943)
[»] chr5 (5 HSPs)
chr5 (1-236)||(41718567-41718801)
chr5 (75-236)||(41723293-41723453)
chr5 (75-236)||(34360113-34360273)
chr5 (75-236)||(29585300-29585460)
chr5 (94-236)||(34352405-34352546)
[»] chr4 (12 HSPs)
chr4 (1-236)||(48701747-48701981)
chr4 (1-236)||(42266060-42266294)
chr4 (1-236)||(30950109-30950342)
chr4 (73-236)||(42270779-42270941)
chr4 (81-236)||(24520031-24520185)
chr4 (75-236)||(48697131-48697292)
chr4 (74-236)||(30945476-30945636)
chr4 (75-229)||(10427444-10427597)
chr4 (88-164)||(48782956-48783031)
chr4 (77-154)||(36615361-36615438)
chr4 (86-154)||(30165900-30165968)
chr4 (54-95)||(1999189-1999230)
[»] chr3 (8 HSPs)
chr3 (1-236)||(5823201-5823435)
chr3 (1-236)||(2817189-2817422)
chr3 (75-236)||(5818513-5818673)
chr3 (75-236)||(54546041-54546200)
chr3 (75-229)||(24659136-24659287)
chr3 (83-173)||(4579270-4579360)
chr3 (89-236)||(31204781-31204926)
chr3 (63-119)||(25877086-25877142)
[»] chr2 (11 HSPs)
chr2 (1-236)||(825635-825870)
chr2 (1-236)||(15603034-15603268)
chr2 (84-236)||(5198664-5198815)
chr2 (75-236)||(830291-830452)
chr2 (84-236)||(30396920-30397070)
chr2 (82-236)||(28715919-28716070)
chr2 (75-164)||(31592910-31592999)
chr2 (95-155)||(12175768-12175828)
chr2 (75-146)||(13840240-13840311)
chr2 (1-107)||(13843723-13843829)
chr2 (90-139)||(9358158-9358207)
[»] chr7 (6 HSPs)
chr7 (80-229)||(16183636-16183784)
chr7 (51-234)||(8139940-8140121)
chr7 (1-236)||(8138390-8138619)
chr7 (75-236)||(30235179-30235339)
chr7 (1-78)||(25441073-25441150)
chr7 (75-170)||(36528415-36528509)
[»] scaffold0074 (1 HSPs)
scaffold0074 (75-229)||(27226-27379)
[»] chr1 (3 HSPs)
chr1 (75-229)||(46191395-46191546)
chr1 (80-236)||(30697120-30697274)
chr1 (75-229)||(4130249-4130401)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 27878635 - 27878869
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27878635 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggggctctgataccactgttaggtaccagagtaacaaaatat 27878734  T
Q  101 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaaccacggggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||| ||||||||||||||    
T  27878735 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaataaggggaaaaaaccacggggca 27878833  T
Q  201 agagtagagaactttcactaagtggaagaaattaca 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  27878834 agagtagagaactttcactaagtggaagaaattaca 27878869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 1235018 - 1234858
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1235018 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-c 1234920  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
      | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1234919 aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 1234858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 26976131 - 26976291
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26976131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-c 26976229  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
      | ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26976230 aaataaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattaca 26976291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 27873990 - 27874150
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  27873990 tgttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaaca 27874089  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
      | || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27874090 a-ataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 27874150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 18968194 - 18968041
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |    
T  18968194 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaa-c 18968096  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga 229  Q
      | ||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  18968095 aaataaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaaga 18968041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 30967799 - 30967674
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  30967799 ctaagatttttcttaccacaccactagtttatcgcagcggaataacagctacgaactaaaggctctgataccactgttaggtaccagagtaacaaaatat 30967700  T
Q  101 tatcacgcagctaaaataagagacga 126  Q
    ||||| ||||||||||||||||||||    
T  30967699 tatcaagcagctaaaataagagacga 30967674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 233
Target Start/End: Complemental strand, 30986830 - 30986668
Alignment:
Q  74 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaa---acccctc 170  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||   |||||||    
T  30986830 ctgttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaata-tttacgtggaaagtacccctc 30986732  T
Q  171 aacctgacaagg--ggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaatt 233  Q
    || |  | ||||    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  30986731 aa-caaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaatt 30986668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 30966923 - 30966812
Alignment:
Q  121 agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggag-aaaaccacggggcaagagtagagaactttcact 219  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||||   | ||||| |  |||| ||||||||||||||||||||||||||||    
T  30966923 agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaa-ataagggaaataaaatcacggggcaagagtagagaactttcact 30966826  T
Q  220 aagtggaagaaatt 233  Q
    ||||||||||||||    
T  30966825 aagtggaagaaatt 30966812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 21966860 - 21966710
Alignment:
Q  80 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgaca 179  Q
    ||||||| |||||| ||| |||||||||||||| |||||| | | ||||||||||||||| |||| | |||| |||| |||||||||||||||    | |    
T  21966860 ggtaccaaagtaacgaaacattatcacgcagct-aaataacatatgagaaaagaggaactaaacataaaata-tttatgtggaaacccctcaa-taaata 21966764  T
Q  180 aggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaatta 234  Q
    | |||| |||| || ||||||||||||||||||||||||||| ||||||||||||    
T  21966763 aaggga-aaaatcatggggcaagagtagagaactttcactaaatggaagaaatta 21966710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 23012520 - 23012656
Alignment:
Q  94 aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaacc 192  Q
    |||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || ||     ||||||| ||||||    
T  23012520 aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaagggga-aaaacc 23012616  T
Q  193 acggggcaagagtagagaactttcactaagtggaagaaatt 233  Q
    |  |||||||||||||||||||||||||||||  |||||||    
T  23012617 a-tgggcaagagtagagaactttcactaagtgagagaaatt 23012656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9444018 - 9444252
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  9444018 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatat 9444117  T
Q  101 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaaccacggggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||| ||||||||||||||    
T  9444118 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaataaggggaaaaaaccacggggca 9444216  T
Q  201 agagtagagaactttcactaagtggaagaaattaca 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  9444217 agagtagagaactttcactaagtggaagaaattaca 9444252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 9439372 - 9439532
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  9439372 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-c 9439470  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
      | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9439471 aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 9439532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
Q  92 acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca 148  Q
    ||||||||||||||| | |||||||||||||| |||||||||| || ||||||||||    
T  4799371 acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca 4799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 4844943 - 4844870
Alignment:
Q  74 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacac 147  Q
    ||||||||||| |||| ||||||| |||||||||| |  ||||||||||  |||| |||| ||| |||||||||    
T  4844943 ctgttaggtacaagagaaacaaaacattatcacgctgtaaaaataagagttgagataagaagaattgaacacac 4844870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 41718801 - 41718567
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  41718801 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatat 41718702  T
Q  101 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaaccacggggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||| ||||||||||||||    
T  41718701 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaataaggggaaaaaaccacggggca 41718603  T
Q  201 agagtagagaactttcactaagtggaagaaattaca 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  41718602 agagtagagaactttcactaagtggaagaaattaca 41718567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 41723453 - 41723293
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41723453 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-c 41723355  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
      | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41723354 aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 41723293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 34360273 - 34360113
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  34360273 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaa-c 34360175  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
      | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34360174 aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 34360113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 29585300 - 29585460
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29585300 tgttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-c 29585398  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
      | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585399 aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 29585460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 34352546 - 34352405
Alignment:
Q  94 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaacca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||| |||||||    
T  34352546 aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaataaggggaaaaaacca 34352448  T
Q  194 cggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34352447 cggggcaagagtagagaactttcactaagtggaagaaattaca 34352405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 48701747 - 48701981
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  48701747 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatat 48701846  T
Q  101 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaaccacggggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||| ||||||||||||||    
T  48701847 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaataaggggaaaaaaccacggggca 48701945  T
Q  201 agagtagagaactttcactaagtggaagaaattaca 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  48701946 agagtagagaactttcactaagtggaagaaattaca 48701981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 42266294 - 42266060
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  42266294 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttagataccagagtaacaaaatat 42266195  T
Q  101 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaaccacggggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||| ||||||||||||||    
T  42266194 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaataaggggaaaaaaccacggggca 42266096  T
Q  201 agagtagagaactttcactaagtggaagaaattaca 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  42266095 agagtagagaactttcactaagtggaagaaattaca 42266060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 30950109 - 30950342
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  30950109 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaggagctctgataccactgttaggtaccagagtaacaaaatat 30950208  T
Q  101 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaaccacggggca 200  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||   |  | |||| ||||||||||||||    
T  30950209 tatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac--aaataagggaaaaaaccacggggca 30950306  T
Q  201 agagtagagaactttcactaagtggaagaaattaca 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  30950307 agagtagagaactttcactaagtggaagaaattaca 30950342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 73 - 236
Target Start/End: Complemental strand, 42270941 - 42270779
Alignment:
Q  73 actgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 172  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270941 actgttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa 42270842  T
Q  173 cctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
     |  | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42270841 -caaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 42270779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 81 - 236
Target Start/End: Original strand, 24520031 - 24520185
Alignment:
Q  81 gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaa 180  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||    
T  24520031 gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaataa 24520129  T
Q  181 ggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24520130 ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 24520185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 48697131 - 48697292
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  48697131 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-c 48697229  T
Q  175 tgacaagggg-agaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
      | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48697230 aaataaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 48697292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 236
Target Start/End: Original strand, 30945476 - 30945636
Alignment:
Q  74 ctgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 173  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945476 ctgttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 30945575  T
Q  174 ctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
       |  | |||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30945576 --aaataagggaaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattaca 30945636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 10427597 - 10427444
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  10427597 tgttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaa-c 10427499  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga 229  Q
      | ||||||| ||||| |||||| || |||||| ||||||||||||||||||||    
T  10427498 aaataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaaga 10427444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 48783031 - 48782956
Alignment:
Q  88 agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa 164  Q
    |||| ||||||||||||||||   |||||||||| ||||||||| ||||||||||||||||||| ||||||||||||    
T  48783031 agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaa 48782956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
Q  77 ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 154  Q
    |||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| |||||    
T  36615361 ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt 36615438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 154
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
Q  86 agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt 154  Q
    |||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| |||||||    
T  30165968 agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt 30165900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 1999230 - 1999189
Alignment:
Q  54 aaccaagggctctgataccactgttaggtaccagagtaacaa 95  Q
    ||||||| |||||||||||||||||||||| |||| ||||||    
T  1999230 aaccaagtgctctgataccactgttaggtatcagaataacaa 1999189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 5823201 - 5823435
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  5823201 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatat 5823300  T
Q  101 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaaccacggggca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||| ||||||||||||||    
T  5823301 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaataaggggaaaaaaccacggggca 5823399  T
Q  201 agagtagagaactttcactaagtggaagaaattaca 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  5823400 agagtagagaactttcactaagtggaagaaattaca 5823435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 2817189 - 2817422
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    ||||||||||||||||||| |||||||||||| || ||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||    
T  2817189 ctaagatttttcttaccacaccactagtttattactgcggaataacaactacgaaccagcggctttgataccactgttaggtaccagagtaacaaaatat 2817288  T
Q  101 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaaccacggggca 200  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   |  | |||| |||||||| |||||    
T  2817289 tatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac--aaataagggaaaaaaccacagggca 2817386  T
Q  201 agagtagagaactttcactaagtggaagaaattaca 236  Q
    |||||| |||||| ||||||||||||||||||||||    
T  2817387 agagtaaagaactctcactaagtggaagaaattaca 2817422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 75 - 236
Target Start/End: Original strand, 5818513 - 5818673
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5818513 tgttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-c 5818611  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
    | | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5818612 taataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 5818673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 54546200 - 54546041
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||| |    
T  54546200 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaata-tttacgtggaaacccctcaa-c 54546103  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
      | ||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  54546102 aaataaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattaca 54546041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 24659136 - 24659287
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  24659136 tgttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaa-c 24659234  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga 229  Q
      | ||||||| |||||||||||||||||||  ||||||||||||||||||||||    
T  24659235 aaataaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga 24659287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 4579360 - 4579270
Alignment:
Q  83 accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 173  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4579360 accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac 4579270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 31204781 - 31204926
Alignment:
Q  89 gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaa 188  Q
    |||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||   | ||| ||| ||    
T  31204781 gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaa-ataagaggaaaa 31204877  T
Q  189 aaccacgg-ggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
    || ||||| ||||| ||||||||||||||||||||||| | ||||||||    
T  31204878 aatcacggaggcaatagtagagaactttcactaagtgggaaaaattaca 31204926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 25877142 - 25877086
Alignment:
Q  63 ctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataa 119  Q
    |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||    
T  25877142 ctctgataccactgttaggtaccagaataacataatattattacgcaactaaaataa 25877086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 825870 - 825635
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  825870 ctaagatttttcttaccacttcactagtttatcacagcggaataacagctacgaaccagcggctctgataccactgttaggtaccagagtaacaaaatat 825771  T
Q  101 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaagggg-agaaaaccacggggc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  | |||||| | |||||||||||||    
T  825770 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaa-caaataaggggaaaaaaaccacggggc 825672  T
Q  200 aagagtagagaactttcactaagtggaagaaattaca 236  Q
    |||||||||||||||||||||||||||||||||||||    
T  825671 aagagtagagaactttcactaagtggaagaaattaca 825635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 15603268 - 15603034
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    ||||||| |||||||||||||||| ||||| |  || ||||||||||  |||||||||| | |||||||| ||||||| |||   ||||||| |||||||    
T  15603268 ctaagatatttcttaccactccaccagttttttgcatcggaataacaattacgaaccaatgactctgatagcactgttgggtgtgagagtaagaaaatat 15603169  T
Q  101 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaaccacggggca 200  Q
    |||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||||| ||||||||||||||    
T  15603168 tatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaataaggggaaaaaaccacggggca 15603070  T
Q  201 agagtagagaactttcactaagtggaagaaattaca 236  Q
    ||||||||||||||||||||||| ||||||||||||    
T  15603069 agagtagagaactttcactaagtagaagaaattaca 15603034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 84 - 236
Target Start/End: Original strand, 5198664 - 5198815
Alignment:
Q  84 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | |||||    
T  5198664 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaataaggg 5198762  T
Q  184 gagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198763 gaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 5198815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 830452 - 830291
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  830452 tgttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-c 830354  T
Q  175 tgacaagggg-agaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
      | |||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  830353 aaataaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattaca 830291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 236
Target Start/End: Original strand, 30396920 - 30397070
Alignment:
Q  84 ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggg 183  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| |||||||||||| |  | |||||    
T  30396920 ccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaa-caaataaggg 30397016  T
Q  184 gagaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattaca 236  Q
     | |||| ||| |||| |||||||||||| ||||||||||||||||||||||||    
T  30397017 aaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattaca 30397070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 28716070 - 28715919
Alignment:
Q  82 taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaag 181  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |    | |||    
T  28716070 taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaata-tttacgtggaaacccctc-attaaataag 28715973  T
Q  182 gggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
    |||| ||||||||  |  |||| |||||||||||||| |||||||||||||||||    
T  28715972 ggga-aaaaccacaagagaagaatagagaactttcacaaagtggaagaaattaca 28715919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 31592910 - 31592999
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaa 164  Q
    |||| |||| || ||||||| ||||||||||| ||| || ||||||||||||||||||||||||  |||| |||||| ||||||||||||    
T  31592910 tgttgggtatcaaagtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaa 31592999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 12175768 - 12175828
Alignment:
Q  95 aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatatttt 155  Q
    ||||||||||||||| ||||||||| ||| || |||| || || |||||||||||||||||    
T  12175768 aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt 12175828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 13840240 - 13840311
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacaca 146  Q
    |||| ||||||||| |||||||||||||||||| |  || ||||| ||| |||||| ||||||| |||||||    
T  13840240 tgttgggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca 13840311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 13843723 - 13843829
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    |||| ||||||||||||||||||| |||||   ||||||||| |||    |||| |||| |||||| ||||||||  | | || |||||||| |||||||    
T  13843723 ctaatatttttcttaccactccaccagtttgctacagcggaacaactatcacgagccaatggctctaataccacttgtggctatcagagtaataaaatat 13843822  T
Q  101 tatcacg 107  Q
    |||||||    
T  13843823 tatcacg 13843829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
Q  90 taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact 139  Q
    |||| ||||||||| |||||||||||| || ||||||||||||| |||||    
T  9358158 taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact 9358207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 80 - 229
Target Start/End: Original strand, 16183636 - 16183784
Alignment:
Q  80 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgaca 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | |    
T  16183636 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaa-caaata 16183734  T
Q  180 aggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga 229  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  16183735 aggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 16183784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 51 - 234
Target Start/End: Original strand, 8139940 - 8140121
Alignment:
Q  51 acgaaccaagggctctgataccactgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaat 150  Q
    ||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||    
T  8139940 acgaaccaatggctctaataccactgttgggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaat 8140039  T
Q  151 attttacgtggaaacccctcaacctgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaatta 234  Q
    | |||| ||||||||||||||| |  | ||||||||||||||| |||| |||| |||| |||||||||| ||||||||||||||    
T  8140040 a-tttatgtggaaacccctcaa-caaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaatta 8140121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 8138390 - 8138619
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgttaggtaccagagtaacaaaatat 100  Q
    ||||||||||||||||||||| || ||||     | || |||||||  | ||||||||| |||||| ||||||||||| |||| ||||||| |||| |||    
T  8138390 ctaagatttttcttaccactcgaccagttg----cggcagaataacgacaacgaaccaatggctctaataccactgttgggtagcagagtatcaaagtat 8138485  T
Q  101 tatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgacaaggggagaaaaccacggggca 200  Q
    |||||||||||||||||||||||||||||||||  |||| |||||||| ||  ||| |||||||||||| || |  ||||||||||||||||||| ||||    
T  8138486 tatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagta-attatgtggaaaccccttaa-caaacaaggggagaaaaccacgaggca 8138583  T
Q  201 agagtagagaactttcactaagtggaagaaattaca 236  Q
    ||| ||||||||||||||||| ||||||||||||||    
T  8138584 agattagagaactttcactaaatggaagaaattaca 8138619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 30235339 - 30235179
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    |||| |||||||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  30235339 tgttgggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaa-c 30235242  T
Q  175 tgacaagggg-agaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
      | |||||| | |||||||||||  ||||||||| |||||||| ||| | ||||||||||||    
T  30235241 gaataaggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattaca 30235179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25441150 - 25441073
Alignment:
Q  1 ctaagatttttcttaccactccactagtttatcacagcggaataacagctacgaaccaagggctctgataccactgtt 78  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||||||    
T  25441150 ctaagatttttcttaccactccactagtttatcacagcggaataacaactacaaatcaatggctctgataccactgtt 25441073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 170
Target Start/End: Original strand, 36528415 - 36528509
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctc 170  Q
    |||| |||| |||||||||||| ||  || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| ||||||||||||||||||    
T  36528415 tgttgggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctc 36528509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 75 - 229
Target Start/End: Original strand, 27226 - 27379
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |    
T  27226 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaa-c 27324  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga 229  Q
      | ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27325 aaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 27379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 46191546 - 46191395
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |    
T  46191546 tgttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaa--cacaatattttacgtggaaacccctcaa-c 46191450  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga 229  Q
      | ||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  46191449 aaataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaaga 46191395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 30697120 - 30697274
Alignment:
Q  80 ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacctgaca 179  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| |  | |    
T  30697120 ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaata-tttacgtggaaacccctcaa-caaata 30697217  T
Q  180 aggggagaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 236  Q
    |||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  30697218 aggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattaca 30697274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 4130401 - 4130249
Alignment:
Q  75 tgttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacc 174  Q
    ||||||||||  ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||     
T  4130401 tgttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaaca 4130303  T
Q  175 tgacaaggggagaaaaccacggggcaagagtagagaactttcactaagtggaaga 229  Q
      | || |||| |||||||||||||||||||||||||||||||||||||||||||    
T  4130302 a-ataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga 4130249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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