View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15687_low_3 (Length: 221)

Name: NF15687_low_3
Description: NF15687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15687_low_3
NF15687_low_3
[»] chr6 (5 HSPs)
chr6 (1-203)||(27878988-27879185)
chr6 (103-151)||(30986430-30986478)
chr6 (103-142)||(30966566-30966605)
chr6 (35-65)||(30986499-30986529)
chr6 (37-65)||(30966626-30966654)
[»] chr4 (4 HSPs)
chr4 (1-203)||(30950461-30950658)
chr4 (1-203)||(30945755-30945952)
chr4 (62-203)||(48702138-48702279)
chr4 (62-203)||(48697449-48697590)
[»] chr2 (4 HSPs)
chr2 (62-203)||(5198972-5199113)
chr2 (1-56)||(825514-825569)
chr2 (1-56)||(830170-830225)
chr2 (86-156)||(28715678-28715747)
[»] chr3 (2 HSPs)
chr3 (62-203)||(2817568-2817709)
chr3 (1-66)||(54545857-54545922)
[»] chr5 (3 HSPs)
chr5 (117-202)||(29585662-29585747)
chr5 (62-152)||(41718320-41718410)
chr5 (62-152)||(41723046-41723136)
[»] chr7 (2 HSPs)
chr7 (102-156)||(30234920-30234974)
chr7 (1-62)||(30234997-30235058)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27878988 - 27879185
Alignment:
Q  1 atttttcctctcactattctactaagaacaagtagttgttgtgttactttgttctgtgatggtgttgttactaatttgggatgagtagaatggtgcaagg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||    
T  27878988 atttttcctctctctattctactaagaacaagtagttgttgtgttactttgttctg-----gtgttgttactaatttgggatgagtagaatggtgcaagg 27879082  T
Q  101 gacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27879083 gacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaaca 27879182  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Complemental strand, 30986478 - 30986430
Alignment:
Q  103 catgctatttatactagtgaaagagccatgccccaaccaattgcattta 151  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  30986478 catgctatttatattagtgaaagagccatgccccaaccaattacattta 30986430  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 30966605 - 30966566
Alignment:
Q  103 catgctatttatactagtgaaagagccatgccccaaccaa 142  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30966605 catgctatttatactagtgaaagagccatgccccaaccaa 30966566  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 65
Target Start/End: Complemental strand, 30986529 - 30986499
Alignment:
Q  35 gttgttgtgttactttgttctgtgatggtgt 65  Q
    |||||||||||||||||||||||||||||||    
T  30986529 gttgttgtgttactttgttctgtgatggtgt 30986499  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 30966654 - 30966626
Alignment:
Q  37 tgttgtgttactttgttctgtgatggtgt 65  Q
    |||||||||||||||||||||||||||||    
T  30966654 tgttgtgttactttgttctgtgatggtgt 30966626  T

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Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 30950461 - 30950658
Alignment:
Q  1 atttttcctctcactattctactaagaacaagtagttgttgtgttactttgttctgtgatggtgttgttactaatttgggatgagtagaatggtgcaagg 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||    
T  30950461 atttttcctctctctattctactaagaacaagtagttgttgtgttactttgtt-----atggtgttgttactaatttgggatgagtagaatggtgcaagg 30950555  T
Q  101 gacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30950556 gacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaaca 30950655  T

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Target: chr4; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 30945755 - 30945952
Alignment:
Q  1 atttttcctctcactattctactaagaacaagtagttgttgtgttactttgttctgtgatggtgttgttactaatttgggatgagtagaatggtgcaagg 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||    
T  30945755 atttttcctctctctattctactaagaacaagtagttgttgtgttactttgttctg-----gtgttgttactaatttgggatgagtagaatggtgcaagg 30945849  T
Q  101 gacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30945850 gacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcatgtgaattttcaactttgcatagtaactttccatgtgaaca 30945949  T

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Target: chr4; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 62 - 203
Target Start/End: Original strand, 48702138 - 48702279
Alignment:
Q  62 gtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtg 161  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48702138 gtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtg 48702237  T
Q  162 tgaattttcaactttgcatagtaactttccatgtgaacatag 203  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  48702238 tggattttcaactttgcatagtaactttccatgtgaacatag 48702279  T

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Target: chr4; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 62 - 203
Target Start/End: Original strand, 48697449 - 48697590
Alignment:
Q  62 gtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtg 161  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48697449 gtgttgttactgatttgggatgagtagaataatgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcatg 48697548  T
Q  162 tgaattttcaactttgcatagtaactttccatgtgaacatag 203  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  48697549 tgaattttcaactttgcatagtaactttccatgtgaacatag 48697590  T

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Target: chr2 (Bit Score: 134; Significance: 6e-70; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 62 - 203
Target Start/End: Original strand, 5198972 - 5199113
Alignment:
Q  62 gtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtg 161  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5198972 gtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtg 5199071  T
Q  162 tgaattttcaactttgcatagtaactttccatgtgaacatag 203  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  5199072 tggattttcaactttgcatagtaactttccatgtgaacatag 5199113  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 825569 - 825514
Alignment:
Q  1 atttttcctctcactattctactaagaacaagtagttgttgtgttactttgttctg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  825569 atttttcctctcactattctactaagaacaagtagttgttgtgttacttttttctg 825514  T

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Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 830225 - 830170
Alignment:
Q  1 atttttcctctcactattctactaagaacaagtagttgttgtgttactttgttctg 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  830225 atttttcctctcactattctactaagaacaagtagttgttgtgttacttttttctg 830170  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 28715747 - 28715678
Alignment:
Q  86 tagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggca 156  Q
    |||||||||||||| | |||||||||||||  ||||||||| |||||||||||||| || |||||||||||    
T  28715747 tagaatggtgcaagag-catgctatttataggagtgaaagaaccatgccccaaccatttacatttatggca 28715678  T

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Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 62 - 203
Target Start/End: Original strand, 2817568 - 2817709
Alignment:
Q  62 gtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtg 161  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817568 gtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatgtatactagtgaaagagccatgccccaaccaattgcatttatggcagcgtg 2817667  T
Q  162 tgaattttcaactttgcatagtaactttccatgtgaacatag 203  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  2817668 tgaattttcaactttgcatagtaacttcccatgtgaacatag 2817709  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 54545922 - 54545857
Alignment:
Q  1 atttttcctctcactattctactaagaacaagtagttgttgtgttactttgttctgtgatggtgtt 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54545922 atttttcctctcactattctactaagaacaagtagttgttgtgttactttgttctgtgatggtgtt 54545857  T

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Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 29585662 - 29585747
Alignment:
Q  117 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacata 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29585662 tagtgaaagagccatgccccaaccaattgcatttatggcagcgtgtgaattttcaactttgcatagtaactttccatgtgaacata 29585747  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 41718410 - 41718320
Alignment:
Q  62 gtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  41718410 gtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 41718320  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 41723136 - 41723046
Alignment:
Q  62 gtgttgttactaatttgggatgagtagaatggtgcaagggacatgctatttatactagtgaaagagccatgccccaaccaattgcatttat 152  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |  | || ||||||||| |||||| || |||||||    
T  41723136 gtgttgttactgatttgggatgagtagaatggtgcaagggacatgctatttataggaccgtaaaagccatgcctcaaccattttcatttat 41723046  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 102 - 156
Target Start/End: Complemental strand, 30234974 - 30234920
Alignment:
Q  102 acatgctatttatactagtgaaagagccatgccccaaccaattgcatttatggca 156  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30234974 acatgctatttatactagtgaaagagccatgccccaaccaattacatttatggca 30234920  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30235058 - 30234997
Alignment:
Q  1 atttttcctctcactattctactaagaacaagtagttgttgtgttactttgttctgtgatgg 62  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||||||    
T  30235058 atttttcctctcactactctattgagaacaagtagttgttgtgttactttgttctctgatgg 30234997  T

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