View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15688_high_5 (Length: 225)
Name: NF15688_high_5
Description: NF15688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15688_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 54896072 - 54896279
Alignment:
| Q |
1 |
atcaacagccagaacacgcataccaactggaaaaccttcttctgtaacatcttcacccaccaaacgatcctccacagccatcataaaccagaaaacaaat |
100 |
Q |
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| T |
54896072 |
atcaacagccagaacacgcataccaactggaaaaccttcttctgtaacatcttcacccaccaaacgatcctccacagccatcataaaccagaaaacaaat |
54896171 |
T |
|
| Q |
101 |
aaacaaaacagaaaacaagtatattgattagtgatcaaacaaataacacacgaataagttcaagaaaaggcctagagagaaaaatgcaaatatatttaat |
200 |
Q |
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| T |
54896172 |
aaacaaaacagaaaacaagtatattgattagtgatcaaacaaataacacacgaataagttcaagaaaagacctagagagaaaaatgcaaatatatttaat |
54896271 |
T |
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| Q |
201 |
ggctttgt |
208 |
Q |
| |
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|||||||| |
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| T |
54896272 |
ggctttgt |
54896279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 54890759 - 54890955
Alignment:
| Q |
1 |
atcaacagccagaacacgcataccaactggaaaaccttcttctgta-acatcttcacccaccaaacgatcctccacagccatcataaaccagaaaacaaa |
99 |
Q |
| |
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|||||||||||||||||||||||| || |||||| |||| |||| | |||| |||| || ||||| ||| ||||||||||||| | |||||| || |||| |
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| T |
54890759 |
atcaacagccagaacacgcatacccaccggaaaatcttc-tctgaagacattttcaacctccaaaggattctccacagccatcgtgaaccag-aatcaaa |
54890856 |
T |
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| Q |
100 |
taaacaaaacagaaaacaagtatattgattagtgatcaaacaaataacacacgaataagt-------tcaagaaaaggcctagagagaaaaatgcaaata |
192 |
Q |
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|| |||||||||||||||| ||||||| |||||||| |||||| |||| |||| |||| ||||||||||||||||||||||||| |||||| |
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| T |
54890857 |
tatccaaaacagaaaacaag--tattgatcagtgatcagacaaatcacactcgaaaaagttccaaactcaagaaaaggcctagagagaaaaacacaaata |
54890954 |
T |
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