View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15688_low_2 (Length: 532)

Name: NF15688_low_2
Description: NF15688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15688_low_2
NF15688_low_2
[»] chr4 (9 HSPs)
chr4 (19-456)||(20426607-20427044)
chr4 (38-151)||(20453093-20453207)
chr4 (22-91)||(48741994-48742063)
chr4 (30-138)||(9569198-9569306)
chr4 (30-103)||(54295079-54295152)
chr4 (35-136)||(9581948-9582049)
chr4 (35-136)||(9587643-9587744)
chr4 (30-91)||(37897951-37898012)
chr4 (32-120)||(20455406-20455494)
[»] chr8 (6 HSPs)
chr8 (21-337)||(15337909-15338228)
chr8 (21-337)||(15426974-15427293)
chr8 (21-337)||(15518278-15518597)
chr8 (35-103)||(12652271-12652339)
chr8 (36-103)||(26607069-26607136)
chr8 (55-103)||(13024766-13024814)
[»] chr2 (6 HSPs)
chr2 (21-132)||(44937765-44937876)
chr2 (23-151)||(44918435-44918563)
chr2 (239-355)||(44912263-44912379)
chr2 (36-104)||(44912517-44912585)
chr2 (34-88)||(44141455-44141509)
chr2 (241-301)||(44918282-44918342)
[»] chr1 (3 HSPs)
chr1 (23-218)||(51869997-51870192)
chr1 (27-106)||(368798-368877)
chr1 (30-106)||(361883-361959)
[»] scaffold0054 (2 HSPs)
scaffold0054 (30-138)||(39782-39890)
scaffold0054 (30-91)||(33478-33539)
[»] chr6 (7 HSPs)
chr6 (27-107)||(32740709-32740789)
chr6 (27-138)||(29131311-29131422)
chr6 (30-142)||(32960693-32960805)
chr6 (30-103)||(29012838-29012911)
chr6 (33-101)||(34258255-34258323)
chr6 (30-104)||(29145302-29145376)
chr6 (30-91)||(29300084-29300145)
[»] chr5 (4 HSPs)
chr5 (27-91)||(42637359-42637423)
chr5 (37-99)||(40549282-40549344)
chr5 (23-103)||(30651561-30651641)
chr5 (31-103)||(32642956-32643028)
[»] scaffold0129 (2 HSPs)
scaffold0129 (30-103)||(17152-17225)
scaffold0129 (31-91)||(10482-10542)
[»] chr3 (2 HSPs)
chr3 (30-91)||(44550492-44550553)
chr3 (35-91)||(5162455-5162511)


Alignment Details
Target: chr4 (Bit Score: 406; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 20426607 - 20427044
Alignment:
Q  19 atttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20426607 atttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattga 20426706  T
Q  119 gcgtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaactt 218  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20426707 gcgtcttattggagtggggatgaacggtgatattttcctaatataaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaactt 20426806  T
Q  219 gggtgttatgggaggcgttttaatattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttctaccttcg 318  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20426807 gggtgttatgggaggcgtttttatattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttttaccttcg 20426906  T
Q  319 aaatttatgattgtgtttagtaggattttacatttgtttatcaccctgatcataaatattatcaatgacatgaaaaataaagaatgtatttgataatgat 418  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20426907 aaatttatgatcgtgtttagtaggattttacatttgtttatcaccctgatcataaatattatcaatgacatgaaaaataaagaatgtatttgataatgat 20427006  T
Q  419 gaataatgctgtattattatcaattttactgtagtatt 456  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  20427007 gaataatgctgtattattatcaattttatagtagtatt 20427044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 20453093 - 20453207
Alignment:
Q  38 tcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttg-ttggaccattgctctacattgagcgtcttattggagtggg 136  Q
    |||||||||||||||| ||||  |||||||||||||||| || || ||| ||||||||| ||| ||||||   |||| ||||||||| |||||||| |||    
T  20453093 tcacatatcaattttaggtgagttcggcgtgaaggaatcatgtactaaattctttgttgtttgaaccattttcctacgttgagcgtcatattggagcggg 20453192  T
Q  137 gaagaacggtgatat 151  Q
     ||||||||||||||    
T  20453193 aaagaacggtgatat 20453207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 48742063 - 48741994
Alignment:
Q  22 tagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 91  Q
    |||| |||||||| |||  ||||||||||||| |||||||||| ||||||||||| ||||| ||||||||    
T  48742063 tagagacaactaccttttgcatatcaattttaggtgaactcggtgtgaaggaatcttggactaaactctt 48741994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 9569198 - 9569306
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg 129  Q
    |||| |||||||||||| |||||  |||||   ||| | |||||||||||||||||||||||  |||||||||| |||   | ||||||||||| ||| |    
T  9569198 actaattttcacatatcgattttgggtgaatatggcattaaggaatcgtggaccaaactcttccttgttggaccgttgtcttgcattgagcgtcctatcg 9569297  T
Q  130 gagtgggga 138  Q
    |||||||||    
T  9569298 gagtgggga 9569306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 54295152 - 54295079
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 103  Q
    |||| ||||||||||||||||||  ||||| |||| ||||  ||||||||||||||||| ||  ||||||||||    
T  54295152 actaattttcacatatcaattttgggtgaattcggtgtgatagaatcgtggaccaaacttttcattgttggacc 54295079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 9582049 - 9581948
Alignment:
Q  35 ttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtg 134  Q
    ||||||||||||||||||  |||||  |||  | ||||| || ||||||||||||||  | |||||||| |||   | ||||||||||| ||||||||||    
T  9582049 ttttcacatatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtg 9581950  T
Q  135 gg 136  Q
    ||    
T  9581949 gg 9581948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 9587744 - 9587643
Alignment:
Q  35 ttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattggagtg 134  Q
    ||||||||||||||||||  |||||  |||  | ||||| || ||||||||||||||  | |||||||| |||   | ||||||||||| ||||||||||    
T  9587744 ttttcacatatcaattttgggtgaatacggtataaaggagtcatggaccaaactcttcatggttggaccgttgtcttgcattgagcgtcctattggagtg 9587645  T
Q  135 gg 136  Q
    ||    
T  9587644 gg 9587643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 37897951 - 37898012
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 91  Q
    |||||||||||| ||||| ||||  | ||||| ||  |||||||||||||||||||||||||    
T  37897951 actacttttcacgtatcagttttgggcgaacttggtatgaaggaatcgtggaccaaactctt 37898012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 20455494 - 20455406
Alignment:
Q  32 tacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagc 120  Q
    ||||| |||||||||| ||||   ||||||||||||| | ||||| | ||| |||||||| ||||||||| |||| |  ||||||||||    
T  20455494 tacttatcacatatcatttttggatgaactcggcgtgcaagaatcatagacaaaactcttagttgttggatcatttccatacattgagc 20455406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 15338228 - 15337909
Alignment:
Q  21 ttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagc 120  Q
    ||||||| ||||| |||| |||||||||||||  |||||||||||||||| ||||| ||||| ||||| ||||||||||||||| | |  |||||||| |    
T  15338228 ttagataaaactattttttacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggaccacttccttacattgatc 15338129  T
Q  121 gtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaacttgg 220  Q
    |||||||||||| ||| ||||| |||||||| ||| |  || ||||||||||| |||||||||||||   ||||  ||| ||| |||||||| ||||| |    
T  15338128 gtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagatggtaagctagtctgtttcagtttaagtactcagaagactgaagaactt-g 15338030  T
Q  221 gtgttatgggag-gcgttt---taatattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttctacctt 316  Q
    ||||||  |||| || |||   | || |||||||||||||||||||  || | || ||||| ||||||||||| |||||||||||||||||||   ||||    
T  15338029 gtgttaaaggagcgcatttttatgatcttgcaatttacaagaaaagttttctctcaattggtggaataaatcattaattggtttttcatgtttacccctt 15337930  T
Q  317 cgaaatttatgattgtgttta 337  Q
     || |||||||||||||||||    
T  15337929 agagatttatgattgtgttta 15337909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 15427293 - 15426974
Alignment:
Q  21 ttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagc 120  Q
    ||||||| ||||| |||| |||||||||||||  |||||||||||||||| ||||| ||||| ||||| ||||||||||||||| | |  |||||||| |    
T  15427293 ttagataaaactattttttacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggaccacttccttacattgatc 15427194  T
Q  121 gtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaacttgg 220  Q
    |||||||||||| ||| ||||| |||||||| ||| |  || ||||||||||| |||||||||||||   ||||  ||| ||| |||||||| ||||| |    
T  15427193 gtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagatggtaagctagtctgtttcagtttaagtactcagaagactgaagaactt-g 15427095  T
Q  221 gtgttatgggag-gcgttt---taatattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttctacctt 316  Q
    ||||||  |||| || |||   | || |||||||||||||||||||  || | || ||||| ||||||||||| |||||||||||||||||||   ||||    
T  15427094 gtgttaaaggagcgcatttttatgatcttgcaatttacaagaaaagttttctctcaattggtggaataaatcattaattggtttttcatgtttacccctt 15426995  T
Q  317 cgaaatttatgattgtgttta 337  Q
     || |||||||||||||||||    
T  15426994 agagatttatgattgtgttta 15426974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 21 - 337
Target Start/End: Complemental strand, 15518597 - 15518278
Alignment:
Q  21 ttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagc 120  Q
    ||||||| ||||| |||| |||||||||||||  |||||||||||||||| ||||| ||||| ||||| ||||||||||||||| | |  |||||||| |    
T  15518597 ttagataaaactattttttacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactatttgttgttggaccacttccttacattgatc 15518498  T
Q  121 gtcttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaacttgg 220  Q
    |||||||||||| ||| ||||| |||||||| ||| |  || ||||||||||| |||||||||||||   ||||  ||| ||| |||||||| ||||| |    
T  15518497 gtcttattggagcgggaaagaatggtgatatattcttccaaaaaaaagatggtaagctagtctgtttcagtttaagtactcagaagactgaagaactt-g 15518399  T
Q  221 gtgttatgggag-gcgttt---taatattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttctacctt 316  Q
    ||||||  |||| || |||   | || |||||||||||||||||||  || | || ||||| ||||||||||| |||||||||||||||||||   ||||    
T  15518398 gtgttaaaggagcgcatttttatgatcttgcaatttacaagaaaagttttctctcaattggtggaataaatcattaattggtttttcatgtttacccctt 15518299  T
Q  317 cgaaatttatgattgtgttta 337  Q
     || |||||||||||||||||    
T  15518298 agagatttatgattgtgttta 15518278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 103
Target Start/End: Original strand, 12652271 - 12652339
Alignment:
Q  35 ttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 103  Q
    |||||||||||| |||||  ||||| | || ||  ||||||||||||| ||||||||||||||||||||    
T  12652271 ttttcacatatcgattttgggtgaaattggtgttgaggaatcgtggactaaactctttgttgttggacc 12652339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 26607069 - 26607136
Alignment:
Q  36 tttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 103  Q
    ||||| |||||| ||||| | |||||||| ||||| ||||| ||||  ||||||||||||||||||||    
T  26607069 tttcatatatcagttttaggcgaactcggtgtgaaagaatcatggattaaactctttgttgttggacc 26607136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 13024814 - 13024766
Alignment:
Q  55 gtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 103  Q
    |||||||||| || || ||||||||||| ||| ||||||||||||||||    
T  13024814 gtgaactcggtgtcaaagaatcgtggactaaattctttgttgttggacc 13024766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 7e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 44937876 - 44937765
Alignment:
Q  21 ttagatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagc 120  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||| ||||| ||||| ||||||||||||||||||||| | | |||||| ||||    
T  44937876 ttagatacaactacttttcacatatcaattttgggtgaactcggcgtgaaagaatcatggactaaactctttgttgttggaccactaccctacatggagc 44937777  T
Q  121 gtcttattggag 132  Q
    ||||||||||||    
T  44937776 gtcttattggag 44937765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 44918563 - 44918435
Alignment:
Q  23 agatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgt 122  Q
    ||||||| ||| ||||||||||||||||||| ||||||| || | ||| ||||||||||| ||||||||||||||||||||| ||| ||| ||| || ||    
T  44918563 agatacacctatttttcacatatcaattttaggtgaacttggtgggaaagaatcgtggactaaactctttgttgttggaccactgccctatattaagtgt 44918464  T
Q  123 cttattggagtggggaagaacggtgatat 151  Q
     |||| ||||  ||||| || ||||||||    
T  44918463 tttatcggagcagggaaaaatggtgatat 44918435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 44912379 - 44912263
Alignment:
Q  239 taatattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttttcatgtttctaccttcgaaat-ttatgattgtgttta 337  Q
    |||||||||||||||||||||| | ||| | ||| |||| ||||||||| ||||||||| ||||| |||||  ||||| ||||| ||| |||||||||||    
T  44912379 taatattgcaatttacaagaaaggtcttctctcgcttggcggaataaataagtaattggattttcgtgtttgcacctt-gaaatattaggattgtgttta 44912281  T
Q  338 gtaggattttacatttgt 355  Q
     ||| ||||||| |||||    
T  44912280 ttagaattttacttttgt 44912263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 44912585 - 44912517
Alignment:
Q  36 tttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacca 104  Q
    ||||||||||| |||||  ||||||| || |||||||||||||| || |||||||||||||||||||||    
T  44912585 tttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctttgttgttggacca 44912517  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 44141509 - 44141455
Alignment:
Q  34 cttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaact 88  Q
    ||||| ||||||||||| || |||||||||| ||||||||||| |||||||||||    
T  44141509 cttttaacatatcaattctaggtgaactcggtgtgaaggaatcatggaccaaact 44141455  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 301
Target Start/End: Complemental strand, 44918342 - 44918282
Alignment:
Q  241 atattgcaatttacaagaaaagccttgtttcgattggaggaataaatcagtaattggtttt 301  Q
    |||||||||||||||||||||| ||| | ||| |||| ||||||||| ||||||| |||||    
T  44918342 atattgcaatttacaagaaaagtcttctctcggttggtggaataaataagtaattcgtttt 44918282  T

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Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 51869997 - 51870192
Alignment:
Q  23 agatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgt 122  Q
    ||||| |||||||| |||||||||||||||| |||||||||||||||||||||  | ||| ||||||||| |||||||  ||||   ||||||||| |||    
T  51869997 agataaaactacttatcacatatcaattttaggtgaactcggcgtgaaggaattatagactaaactctttattgttgggtcattttcctacattgatcgt 51870096  T
Q  123 cttattggagtggggaagaacggtgatattttcctaaaacaaaaagatggtcagctagtctgttttgatttacatacccaggagactgaaaaactt 218  Q
    ||||||||||  || |||||| ||||||| ||  |  || ||| ||||||||| ||||| | ||||||||||  ||||||  |||||||| |||||    
T  51870097 cttattggagcaggaaagaactgtgatatattgttccaaaaaatagatggtcaactagtgtattttgatttaagtacccaaaagactgaagaactt 51870192  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 368798 - 368877
Alignment:
Q  27 acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccatt 106  Q
    |||||||||||||||||||||||| |  ||||| | || ||||||||||| |||| |||||||||  |||||||||||||    
T  368798 acaactacttttcacatatcaattcttggtgaaattggtgtgaaggaatcatggatcaaactcttcattgttggaccatt 368877  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 361883 - 361959
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccatt 106  Q
    ||||||||||||||||||||| |  ||||| |||| ||||||||||| ||||  || |||||  |||||||||||||    
T  361883 actacttttcacatatcaattcttggtgaaatcggtgtgaaggaatcatggataaagctcttcattgttggaccatt 361959  T

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Target: scaffold0054 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 39890 - 39782
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg 129  Q
    ||||||||||||||| |||||||  ||||||||||| | ||||||||||||| ||||||||||  ||||||||| |||   | | ||||||||| ||| |    
T  39890 actacttttcacatagcaattttgggtgaactcggcattaaggaatcgtggatcaaactctttactgttggaccgttgtcttgcgttgagcgtcctatcg 39791  T
Q  130 gagtgggga 138  Q
    |||||||||    
T  39790 gagtgggga 39782  T

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Target: scaffold0054; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 33539 - 33478
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 91  Q
    ||||||||| ||||| |||||||  ||||||||||| | |||||||||||||||||||||||    
T  33539 actacttttgacatagcaattttgggtgaactcggcattaaggaatcgtggaccaaactctt 33478  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 107
Target Start/End: Complemental strand, 32740789 - 32740709
Alignment:
Q  27 acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattg 107  Q
    ||||||||||||| | ||||||||||  ||||| ||||| | |||||||||||||||||||||||  ||||||||||||||    
T  32740789 acaactacttttctcgtatcaattttgggtgaattcggcataaaggaatcgtggaccaaactcttcattgttggaccattg 32740709  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 29131311 - 29131422
Alignment:
Q  27 acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctct-acattgagcgtctt 125  Q
    ||||||||||||||||||||||||||  ||||| | ||| | || ||||||||||||||  ||||  |||||||||||||| |||  | ||||||||| |    
T  29131311 acaactacttttcacatatcaattttgggtgaatttggcataaaagaatcgtggaccaagatcttcattgttggaccattg-tctggcgttgagcgtcct 29131409  T
Q  126 attggagtgggga 138  Q
    |||||||||||||    
T  29131410 attggagtgggga 29131422  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 32960805 - 32960693
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggaccattgctctacattgagcgtcttattg 129  Q
    |||||||||||  ||||||||||   |||| ||||  |||||||||| |||| |||||||||| ||||| |||||||||  |   ||||||||| ||| |    
T  32960805 actacttttcatgtatcaattttggatgaaatcggtatgaaggaatcttggatcaaactctttattgttagaccattgccttgtgttgagcgtcctatgg 32960706  T
Q  130 gagtggggaagaa 142  Q
    |||||||||||||    
T  32960705 gagtggggaagaa 32960693  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 29012838 - 29012911
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 103  Q
    |||| ||||||||||||||||||  | ||  |||| ||||||||||| ||||||||||||||  ||||||||||    
T  29012838 actaattttcacatatcaattttgggggatttcggtgtgaaggaatcatggaccaaactcttcattgttggacc 29012911  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 34258323 - 34258255
Alignment:
Q  33 acttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttgga 101  Q
    |||||||||||||||||||| |  |||| ||||||||| ||||| ||||| |||||||| ||| |||||    
T  34258323 acttttcacatatcaattttgaacgaacacggcgtgaaagaatcatggacaaaactcttcgttattgga 34258255  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 29145302 - 29145376
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacca 104  Q
    |||| ||||||||||||||||||  ||| | | ||  |||||||||| ||||||||||||||| || ||||||||    
T  29145302 actaattttcacatatcaattttgggtggattaggtatgaaggaatcatggaccaaactctttattcttggacca 29145376  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 29300084 - 29300145
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 91  Q
    |||||||||||||||||||||||  |||| ||| |  | ||||||||||||||||| |||||    
T  29300084 actacttttcacatatcaattttgggtgagctcagtataaaggaatcgtggaccaatctctt 29300145  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 42637423 - 42637359
Alignment:
Q  27 acaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 91  Q
    ||||||||||||||||||||||||||  ||||| |||| ||||||||||| ||||||||||||||    
T  42637423 acaactacttttcacatatcaattttgggtgaagtcggggtgaaggaatcatggaccaaactctt 42637359  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 40549282 - 40549344
Alignment:
Q  37 ttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttg 99  Q
    ||||||||||||||||  ||||| |||| ||||||||||| |||| |||||||||||||||||    
T  40549282 ttcacatatcaattttgggtgaagtcggtgtgaaggaatcatggatcaaactctttgttgttg 40549344  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 30651561 - 30651641
Alignment:
Q  23 agatacaactacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 103  Q
    |||||| || || |||||||||||| ||||| ||||||| || ||||  ||||| ||||| ||||||||| || |||||||    
T  30651561 agatacgaccacctttcacatatcagttttaggtgaacttggtgtgagtgaatcatggactaaactctttattattggacc 30651641  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 32642956 - 32643028
Alignment:
Q  31 ctacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 103  Q
    |||||||| ||||||||||||| |||||| |    ||||||||||| |||| |||||||||  ||||||||||    
T  32642956 ctacttttaacatatcaattttgagtgaattaactgtgaaggaatcatggatcaaactcttcattgttggacc 32643028  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 17225 - 17152
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctttgttgttggacc 103  Q
    |||||||||||||| || ||| |  |||||||||| |||||||| || ||||| |||||||| ||| |||||||    
T  17225 actacttttcacatttctattctgggtgaactcggtgtgaaggagtcttggactaaactcttcgttattggacc 17152  T

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Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 10482 - 10542
Alignment:
Q  31 ctacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 91  Q
    ||||||||||||||||||||||  ||||| | || |||||||| || ||||| ||||||||    
T  10482 ctacttttcacatatcaattttgggtgaagttggtgtgaaggagtcttggactaaactctt 10542  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 44550553 - 44550492
Alignment:
Q  30 actacttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 91  Q
    ||||||||||| |||||||||||| ||||| |||| |||||| |||  ||||| ||||||||    
T  44550553 actacttttcaaatatcaattttaggtgaattcggtgtgaagaaattatggactaaactctt 44550492  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 5162455 - 5162511
Alignment:
Q  35 ttttcacatatcaattttaagtgaactcggcgtgaaggaatcgtggaccaaactctt 91  Q
    ||||||||||||||||||  ||||| | || ||||||||||| |||| |||||||||    
T  5162455 ttttcacatatcaattttgggtgaagttggtgtgaaggaatcatggatcaaactctt 5162511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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