View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15688_low_6 (Length: 353)
Name: NF15688_low_6
Description: NF15688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15688_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 341
Target Start/End: Complemental strand, 18577661 - 18577337
Alignment:
| Q |
17 |
tttcagtacacaattgttcatattttatattgttaagctagtgtcatgaatcaacttatcaacaatctcataatcctaacctattactaagtgagcatac |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
18577661 |
tttcagtacacaattgttcatattttatattgttaagctagtgtcatgaatcaacttatcaacaatctcataatcttaacctattactaagtgaggatac |
18577562 |
T |
|
| Q |
117 |
ttgaatgaagttatatggacgtctctgacactccctctcacatgagttacttgggtttgaaatgttgctaatgtacagctctccctatctagtgctgaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18577561 |
ttgaatgaagttatatggacgtctctgacactccctctcacatgagttacttgggtttgaaatgttgctaatgtacagctctccctatctagtgctgaaa |
18577462 |
T |
|
| Q |
217 |
ttcaatttctcataaaatggagacttaaaatcaaactagatttcttattgaaagaagctatgtggtaccatgtcatgaactaactatcctaaaagaacta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18577461 |
ttcaatttctcataaaatggagacttaaaatcaaactagatttcttattgaaagaagctatgtggtaccatgtcatgaactaactatcctaaaagaacta |
18577362 |
T |
|
| Q |
317 |
atacatttagcgtaagaatgatatt |
341 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
18577361 |
atacatttagcgtaagaatgatatt |
18577337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 29171039 - 29170798
Alignment:
| Q |
17 |
tttcagtacacaattgttcatattttatattgttaagctagtgtcatgaatcaacttatcaacaatctcataatcctaacctattactaagtgagcatac |
116 |
Q |
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| T |
29171039 |
tttcagtatgcaattgttcaaactttctattgttaagctagtgtcatgaatcaacttatcaacaatctcataatcctaagctatta---agtgaggatac |
29170943 |
T |
|
| Q |
117 |
ttgaatgaagttatatggacgtctctgacactccctctcacatgagttacttgggtttgaaatgttgctaatgtacagctctccctatctagtgctgaaa |
216 |
Q |
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| |||||| ||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29170942 |
ctaaatgaaattatatggatatctctgacactccctctcacacgagttatttggggttgaaatgttgctaatgtacaactctccctatctagtgctgaaa |
29170843 |
T |
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| Q |
217 |
ttcaatttctcataaaatggagacttaaaatcaaactagatttct |
261 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
29170842 |
atcaatttctcataatatggaggattaaaatcaaactagatttct |
29170798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 318
Target Start/End: Complemental strand, 29170798 - 29170759
Alignment:
| Q |
279 |
tggtaccatgtcatgaactaactatcctaaaagaactaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
29170798 |
tggtaccatgtcatgaactaactatcctaaaagaactaat |
29170759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 10339696 - 10339588
Alignment:
| Q |
17 |
tttcagtacacaattgttcatattttatattgttaagctagtgtcatgaatcaacttatcaacaatctcataatcctaacctattactaagtgagcatac |
116 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10339696 |
tttcagcacacaattgttcatattttatattgttaagctagtgtcatgaatcaacttatcaacaatctcataatcctaacctattactaagtgaggatac |
10339597 |
T |
|
| Q |
117 |
ttgaatgaa |
125 |
Q |
| |
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||||||||| |
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|
| T |
10339596 |
ttgaatgaa |
10339588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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