View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15689_high_1 (Length: 527)
Name: NF15689_high_1
Description: NF15689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15689_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Original strand, 33642126 - 33642617
Alignment:
| Q |
19 |
atcggacaacgatagaaacctcaaaacaaagcctgcgacaacctccttccgatcacatgagcttagaccttgagctaaacttgacatgtgaatcacaaag |
118 |
Q |
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| T |
33642126 |
atcggacaacgatagaaacctcaaaacgaagcctgcgacaacctctttctgatcacatgagcttagaccttgagctaaacttgacatgtgaatcacaaag |
33642225 |
T |
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| Q |
119 |
gaaaaaagaaaacagtgatcaaaagaagaattctggtaattctcccaagagtttgtcagaacatgatgatctttgtattgaatcaagcaagtttaagaaa |
218 |
Q |
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| T |
33642226 |
gaaaaaagaaaacagtgatcagaagaagaattctggtaattctcccaagagtttgtcagaacatgatgatctttgtattgaatcaagcaagtttaagaaa |
33642325 |
T |
|
| Q |
219 |
gattcaggtggtttaaacggttctcagtcgtggttgtcgacaaccgaaggagattacaaagagatggttgctacagtttgcatgcagtgtcacatgttgg |
318 |
Q |
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| T |
33642326 |
gattcaggtggtttaaacggttctcagtcgtggttgtcgacaaccgaaggagattacaaagagatggttgctacagtttgcatgcagtgtcacatgttgg |
33642425 |
T |
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| Q |
319 |
ttatgatatgcaagtcttctcctgcctgtcctaactgcaaattcatgcactcaccagatcagaacccttcgaaattcttgaagagcaggtgcagcttctt |
418 |
Q |
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| T |
33642426 |
ttatgatatgcaagtcttctcctgcctgtcctaactgcaaattcatgcactcaccagatcagaacccttcgaaattcttgaagagcaggtgcagcttctt |
33642525 |
T |
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| Q |
419 |
ctgctctagttaggaaccgcagatactactcatgtagaaaatcttcagcttttatatatacatcatatggcgcaaatgtatcaatcatcctatg |
512 |
Q |
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| T |
33642526 |
ctgctctagttaggaaccgcagatactactcatgtagaaaatcttcagcttt--tatatacatcatatggcgcaaatgtatcaatcatcctatg |
33642617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 403
Target Start/End: Original strand, 26416538 - 26416674
Alignment:
| Q |
270 |
gattacaaagagatggttgctacagtttgcatgcagtgtcacatgttggttatgatatgcaagtcttctcctgcctgtcctaactgcaaattcatgca-- |
367 |
Q |
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||||||||||| ||| |||| |||||||| ||| |||||||||||||||| ||| | ||||| || |||||| | |||||||| |||||||||||||| |
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| T |
26416538 |
gattacaaagaaatgattgcaacagtttgtatgaagtgtcacatgttggtaatgctttgcaaatcatctccttcttgtcctaattgcaaattcatgcatc |
26416637 |
T |
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| Q |
368 |
-ctcaccagatcagaacccttcgaaattcttgaagag |
403 |
Q |
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| T |
26416638 |
caccaccagatcagaacccttccaaatttttgaagag |
26416674 |
T |
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