View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15689_high_6 (Length: 317)

Name: NF15689_high_6
Description: NF15689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15689_high_6
NF15689_high_6
[»] scaffold0595 (2 HSPs)
scaffold0595 (165-305)||(2077-2219)
scaffold0595 (61-180)||(2236-2355)
[»] chr6 (2 HSPs)
chr6 (165-305)||(8327815-8327957)
chr6 (60-180)||(8327678-8327798)
[»] chr2 (7 HSPs)
chr2 (60-131)||(22450994-22451065)
chr2 (59-130)||(6336644-6336715)
chr2 (74-129)||(43542925-43542980)
chr2 (77-130)||(27075003-27075056)
chr2 (81-130)||(43714133-43714182)
chr2 (74-130)||(22450936-22450992)
chr2 (59-123)||(40691198-40691262)
[»] chr7 (2 HSPs)
chr7 (59-130)||(42117523-42117594)
chr7 (77-126)||(11602848-11602897)
[»] chr5 (1 HSPs)
chr5 (70-127)||(5110545-5110602)


Alignment Details
Target: scaffold0595 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 165 - 305
Target Start/End: Complemental strand, 2219 - 2077
Alignment:
Q  165 aacatttgtcccttaaaaaataactatcaatatttgtctttaaaaaataataatttattttgtg--aggccatgcgcctctattttcaagaaagaaaagt 262  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  2219 aacatttgtcccttaaaaaataactatcaatatttgtcattaaaaaataataatttattttgtgtgaggccatgcgcctctattttcaagaaagaaaagt 2120  T
Q  263 ttattttgtgtaattccagccaaatccttactatgctctttca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2119 ttattttgtgtaattccagccaaatccttactatgctctttca 2077  T

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Target: scaffold0595; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 61 - 180
Target Start/End: Complemental strand, 2355 - 2236
Alignment:
Q  61 ctatattagagattagatacatcattgattcaatgaatctaaaaagggaactttcttttataatagagacttgtaaataaatattaatccgacgtttaac 160  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2355 ctatattagagattaaatacatcattgattcaataaatctaaaaaaggaactttcttttataatagagacttgtaaataaatattagtccgacgtttaac 2256  T
Q  161 tactaacatttgtcccttaa 180  Q
    |||||||| |||||||||||    
T  2255 tactaacaattgtcccttaa 2236  T

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Target: chr6 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 165 - 305
Target Start/End: Original strand, 8327815 - 8327957
Alignment:
Q  165 aacatttgtcccttaaaaaataactatcaatatttgtctttaaaaaataataatttattttgtg--aggccatgcgcctctattttcaagaaagaaaagt 262  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  8327815 aacatttgtcccttaaaaaataactatcaatatttgtcattaaaaaataataatttattttgtgtgaggccatgcgcctctattttcaagaaagaaaagt 8327914  T
Q  263 ttattttgtgtaattccagccaaatccttactatgctctttca 305  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  8327915 ttattttgtgtaattccagccaaatccttactatgctctttca 8327957  T

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Target: chr6; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 60 - 180
Target Start/End: Original strand, 8327678 - 8327798
Alignment:
Q  60 tctatattagagattagatacatcattgattcaatgaatctaaaaagggaactttcttttataatagagacttgtaaataaatattaatccgacgtttaa 159  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  8327678 tctatattagagattaaatacatcattgattcaataaatctaaaaaaggaactttcttttataatagagacttgtaaataaatattagtccgacgtttaa 8327777  T
Q  160 ctactaacatttgtcccttaa 180  Q
    ||||||||| |||||||||||    
T  8327778 ctactaacaattgtcccttaa 8327798  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 131
Target Start/End: Original strand, 22450994 - 22451065
Alignment:
Q  60 tctatattagagattagatacatcattgattcaatgaatctaaaaagggaactttcttttataatagagact 131  Q
    ||||||||||  ||||||||||||||||| | ||||||||||||||| ||| | ||| ||||||||||||||    
T  22450994 tctatattaggaattagatacatcattgaatgaatgaatctaaaaagtgaattgtctcttataatagagact 22451065  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 6336644 - 6336715
Alignment:
Q  59 gtctatattagagattagatacatcattgattcaatgaatctaaaaagggaactttcttttataatagagac 130  Q
    |||||||||||  ||||||||||||||| ||| |||||||||||||||   | |||||||||||||| ||||    
T  6336644 gtctatattaggcattagatacatcatttattgaatgaatctaaaaagtagattttcttttataataaagac 6336715  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 43542980 - 43542925
Alignment:
Q  74 tagatacatcattgattcaatgaatctaaaaagggaactttcttttataatagaga 129  Q
    ||||| ||||||| ||| ||||||||||||||| ||||||||| ||||||||||||    
T  43542980 tagatgcatcatttattgaatgaatctaaaaagtgaactttctcttataatagaga 43542925  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 27075056 - 27075003
Alignment:
Q  77 atacatcattgattcaatgaatctaaaaagggaactttcttttataatagagac 130  Q
    |||||||||| ||||||| || |||||||| |||| |||| |||||||||||||    
T  27075056 atacatcatttattcaattaacctaaaaagtgaacgttctcttataatagagac 27075003  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 43714133 - 43714182
Alignment:
Q  81 atcattgattcaatgaatctaaaaagggaactttcttttataatagagac 130  Q
    |||||| ||| ||||||||||||||| ||| ||||| |||||||||||||    
T  43714133 atcatttattgaatgaatctaaaaagtgaattttctcttataatagagac 43714182  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 22450992 - 22450936
Alignment:
Q  74 tagatacatcattgattcaatgaatctaaaaagggaactttcttttataatagagac 130  Q
    ||||||||||||| ||| |||||||||| ||||  |||||||| | |||||||||||    
T  22450992 tagatacatcatttattgaatgaatctataaagtaaactttctctgataatagagac 22450936  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 123
Target Start/End: Original strand, 40691198 - 40691262
Alignment:
Q  59 gtctatattagagattagatacatcattgattcaatgaatctaaaaagggaactttcttttataa 123  Q
    |||||||||||| | ||||||||||||| ||| ||| ||||| |||||  |||||||| ||||||    
T  40691198 gtctatattagaaactagatacatcatttattgaataaatctgaaaagttaactttctcttataa 40691262  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 130
Target Start/End: Original strand, 42117523 - 42117594
Alignment:
Q  59 gtctatattagagattagatacatcattgattcaatgaatctaaaaagggaactttcttttataatagagac 130  Q
    ||||||||||| || ||||||||||||| ||| |||||| |||||||| ||| ||||| | |||||||||||    
T  42117523 gtctatattagggactagatacatcatttattgaatgaacctaaaaagtgaattttctctcataatagagac 42117594  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 11602848 - 11602897
Alignment:
Q  77 atacatcattgattcaatgaatctaaaaagggaactttcttttataatag 126  Q
    |||||||||| ||| ||||||||||||||| |||||||  ||||||||||    
T  11602848 atacatcatttattgaatgaatctaaaaagtgaacttttgtttataatag 11602897  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 5110602 - 5110545
Alignment:
Q  70 agattagatacatcattgattcaatgaatctaaaaagggaactttcttttataataga 127  Q
    |||||| ||| || ||| ||| ||||||||||||||| ||||||||| ||||||||||    
T  5110602 agattatatatattatttattgaatgaatctaaaaagtgaactttctcttataataga 5110545  T

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