View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15689_high_7 (Length: 256)
Name: NF15689_high_7
Description: NF15689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15689_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 22738981 - 22738876
Alignment:
| Q |
17 |
acaacacaatcaaagtggctagaaataggttgcactccttgtggcatacataagggcttacttacccatcatagtaagctcacacaaatcattttcacac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22738981 |
acaacacaatcaaagtggctagaaataggttgcactccttggggcatacataagggcttacttacccatcatagtaagctcacacaaatcattttcacac |
22738882 |
T |
|
| Q |
117 |
aagccc |
122 |
Q |
| |
|
|||||| |
|
|
| T |
22738881 |
aagccc |
22738876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 22738803 - 22738742
Alignment:
| Q |
195 |
tgagatcaataatattttgacaggtcgggcaattggtttggaatttggagactcaaagtccc |
256 |
Q |
| |
|
||||||||| |||||||||||||| | |||||||||| |||||||||||||||||||||||| |
|
|
| T |
22738803 |
tgagatcaacaatattttgacaggccaggcaattggtctggaatttggagactcaaagtccc |
22738742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 225 - 256
Target Start/End: Complemental strand, 17753299 - 17753268
Alignment:
| Q |
225 |
aattggtttggaatttggagactcaaagtccc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
17753299 |
aattggtttggaatttggagactcaaagtccc |
17753268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 10770301 - 10770339
Alignment:
| Q |
215 |
caggtcgggcaattggtttggaatttggagactcaaagt |
253 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10770301 |
caggtcgggcaattggtctggaatttggagactcaaagt |
10770339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University