View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15689_high_8 (Length: 235)
Name: NF15689_high_8
Description: NF15689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15689_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 55714611 - 55714816
Alignment:
| Q |
20 |
ccatgatccacattcacagatttttgcgcactccgatcactgctactataattcaacaatattttaatattttaaagattnnnnnnnnttacgaaacaca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
55714611 |
ccatgatccacattcacagatttttgcgcactccgatcactgctactataattcaacaatattttaatattttaaagattaaaaaaaattacgaaacatg |
55714710 |
T |
|
| Q |
120 |
gacactcttcaaattagacgtgtcccaatgtcgaacattgacatatataatacaatgaattatgtcatttttaaaaattattgtcgatgtacatgtcata |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
55714711 |
gacactcttcaaattagacgtgtctcaatgtcgaacattgacatatataatacagtgaattatgtcatttttaaaaattattgtcgatgtacgtgacata |
55714810 |
T |
|
| Q |
220 |
cttcat |
225 |
Q |
| |
|
|||||| |
|
|
| T |
55714811 |
cttcat |
55714816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University