View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15689_low_3 (Length: 387)
Name: NF15689_low_3
Description: NF15689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15689_low_3 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 33609303 - 33608947
Alignment:
| Q |
14 |
cacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33609303 |
cacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcga |
33609204 |
T |
|
| Q |
114 |
tattccctttttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactg |
213 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33609203 |
tactccctttttaatatggttttaaagggctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactg |
33609104 |
T |
|
| Q |
214 |
aggatcctctaattttgcgtaaggcttttttagcttgctcgagtttaccacgttcaactaagctgttcggtgtgtccgttatgaggaaggaaccaatcgt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| || |
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| T |
33609103 |
aggatcctctaattttgcgtaaggcttttttagcttgctcgagtttaccacgttcaactaagctgttgggtgtgtccgatatgaggaaggaaccaattgt |
33609004 |
T |
|
| Q |
314 |
catcactattgcaggaaccactgcaagtccaagcgaaagtctccatccccatgtgtg |
370 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33609003 |
catcactattgcaggaaccactgcaagtccaagcgaaagtctccatccccatgtgtg |
33608947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 14 - 370
Target Start/End: Complemental strand, 33618478 - 33618122
Alignment:
| Q |
14 |
cacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcga |
113 |
Q |
| |
|
|||||| || |||||||| |||||||| || || || || |||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
33618478 |
cacagagtgaaagaggttgggtgaataaaaggctacaatattgatccctgtaagctgttggaaaaacgggattgcaaatgccatcaccaagtgaggtcga |
33618379 |
T |
|
| Q |
114 |
tattccctttttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | || ||||| |||| |||| | |||| ||||||||||||||||| |||||||||||||| | |
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|
| T |
33618378 |
tattccctttttaatatggttttaaagggctcttgttgcactgatttcgcaatttctgtccacttgataagttcttctaactcgggttcaatatcaaccg |
33618279 |
T |
|
| Q |
214 |
aggatcctctaattttgcgtaaggcttttttagcttgctcgagtttaccacgttcaactaagctgttcggtgtgtccgttatgaggaaggaaccaatcgt |
313 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| | ||||||||||| || |||| ||| ||||| || || |||||||||||||| || || |
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|
| T |
33618278 |
aggatcctctaattttgcgtaaggcttgtttggcttgctctatcttaccacgttctaccaagccgtttggtgtatcggtaatgaggaaggaaccgattgt |
33618179 |
T |
|
| Q |
314 |
catcactattgcaggaaccactgcaagtccaagcgaaagtctccatccccatgtgtg |
370 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
33618178 |
catcacagctgcaggaaccactgcaagtccaagagagagtctccatccccatgtgtg |
33618122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 24 - 367
Target Start/End: Complemental strand, 33627683 - 33627340
Alignment:
| Q |
24 |
aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatattcccttt |
123 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| |||| |||||| ||||| |||||||| | ||||| ||||||||||||||||| ||||||| |
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|
| T |
33627683 |
aagaggttaggtgaatagaaagcaataatgttgatccctgtaacttgttgaaaaaacgggattgctatcgccattaccaagtgaggtcgatactcccttt |
33627584 |
T |
|
| Q |
124 |
ttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactgaggatcctct |
223 |
Q |
| |
|
| |||||||||||||||| |||||| | | |||||||||| || | ||||| ||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
33627583 |
tgaatatggttttaaagggctcttgttgcagtgattttgcaatttttgttgacctaataagttcttctaactcaggttcaatatcaatggaagatcctct |
33627484 |
T |
|
| Q |
224 |
aattttgcgtaaggcttttttagcttgctcgagtttaccacgttcaactaagctgttcggtgtgtccgttatgaggaaggaaccaatcgtcatcactatt |
323 |
Q |
| |
|
|||||| |||| |||||||| |||||||| | ||||||||||| ||||||||||| |||||||| ||||||||||||| |||||| || || || | |
|
|
| T |
33627483 |
gattttgtgtaatgcttttttggcttgctctatcttaccacgttcgactaagctgttgggtgtgtcagttatgaggaaggcaccaattgtaattacagct |
33627384 |
T |
|
| Q |
324 |
gcaggaaccactgcaagtccaagcgaaagtctccatccccatgt |
367 |
Q |
| |
|
||||| || |||||||||||||| || ||||||||||||||||| |
|
|
| T |
33627383 |
gcaggcacaactgcaagtccaagagagagtctccatccccatgt |
33627340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 33588587 - 33588234
Alignment:
| Q |
14 |
cacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcga |
113 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
33588587 |
cacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcga |
33588488 |
T |
|
| Q |
114 |
tattccctttttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactg |
213 |
Q |
| |
|
|||| || | ||||||||| |||| | |||||| | || | ||| | || |||| | |||||| |||||||||||||| || |||| ||||| | |
|
|
| T |
33588487 |
tattgtctctctaatatggtcataaatggctcttgttgcactgctttcgaaatttctgtccacttaaagagttcttctaactcgggctcaacatcaatgg |
33588388 |
T |
|
| Q |
214 |
aggatcctctaattttgcgtaaggcttttttagcttgctcgagtttaccacgttcaactaagctgttcggtgtgtccgttatgaggaaggaaccaatcgt |
313 |
Q |
| |
|
| |||||||| ||||| | || ||||| | ||||| || | || ||||||||||| |||||| | |||||||| | ||||||||||| |||||| || |
|
|
| T |
33588387 |
atgatcctctgattttttgcaatgctttcctggcttggtctatcttgccacgttcaaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgt |
33588288 |
T |
|
| Q |
314 |
catcactattgcaggaaccactgcaagtccaagcgaaagtctccatccccatgt |
367 |
Q |
| |
|
|||||| | |||| |||||||| |||||||| || |||| ||| |||||||| |
|
|
| T |
33588287 |
catcacggcttcaggcaccactgctagtccaagagagagtcgccagccccatgt |
33588234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 33595759 - 33595406
Alignment:
| Q |
14 |
cacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcga |
113 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
33595759 |
cacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcga |
33595660 |
T |
|
| Q |
114 |
tattccctttttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactg |
213 |
Q |
| |
|
|||| || | |||||||| |||| | |||||| | || | ||| | || |||| | |||||| |||||||||||||| || |||| ||||| | |
|
|
| T |
33595659 |
tattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaatttctgtccacttaaagagttcttctaactcgggctcaacatcaatgg |
33595560 |
T |
|
| Q |
214 |
aggatcctctaattttgcgtaaggcttttttagcttgctcgagtttaccacgttcaactaagctgttcggtgtgtccgttatgaggaaggaaccaatcgt |
313 |
Q |
| |
|
| |||||||| ||||| | || ||||| | ||||| || | || ||||||||||| |||||| | |||||||| | ||||||||||| |||||| || |
|
|
| T |
33595559 |
atgatcctctgattttttgcaatgctttcctggcttggtctatcttgccacgttcaaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgt |
33595460 |
T |
|
| Q |
314 |
catcactattgcaggaaccactgcaagtccaagcgaaagtctccatccccatgt |
367 |
Q |
| |
|
|||||| | |||| |||||||| |||||||| || |||| ||| |||||||| |
|
|
| T |
33595459 |
catcacggctccaggcaccactgctagtccaagagagagtcgccagccccatgt |
33595406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 33602890 - 33602537
Alignment:
| Q |
14 |
cacagaatggaagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcga |
113 |
Q |
| |
|
|||||| || |||||||| ||||||||||||||||| ||||||||||| |||| ||||| ||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
33602890 |
cacagattgaaagaggtttggtgaatagaaagcgacaatgttgatccctgtaaactgttgaaaaaatgggattgaaaatgccatgaccaagtgaggtcga |
33602791 |
T |
|
| Q |
114 |
tattccctttttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactg |
213 |
Q |
| |
|
|||| || | |||||||| |||| | |||||| | || | ||| | || |||| | |||||| |||||||||||||| || |||| ||||| | |
|
|
| T |
33602790 |
tattgtctctcaaatatggtcataaatggctcttgttgcactgctttcgaaatttctgtccacttaaagagttcttctaactcgggctcaacatcaatgg |
33602691 |
T |
|
| Q |
214 |
aggatcctctaattttgcgtaaggcttttttagcttgctcgagtttaccacgttcaactaagctgttcggtgtgtccgttatgaggaaggaaccaatcgt |
313 |
Q |
| |
|
| |||||||| ||||| | || ||||| | ||||| || | || ||||||||||| |||||| | |||||||| | ||||||||||| |||||| || |
|
|
| T |
33602690 |
atgatcctctgattttttgcaatgctttcctggcttggtctatcttgccacgttcaaccaagctgctgggtgtgtcggatatgaggaaggcaccaattgt |
33602591 |
T |
|
| Q |
314 |
catcactattgcaggaaccactgcaagtccaagcgaaagtctccatccccatgt |
367 |
Q |
| |
|
|||||| | |||| |||||||| |||||||| || |||| ||| |||||||| |
|
|
| T |
33602590 |
catcacggctccaggcaccactgctagtccaagagagagtcgccagccccatgt |
33602537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 24 - 248
Target Start/End: Complemental strand, 33622657 - 33622433
Alignment:
| Q |
24 |
aagaggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatattcccttt |
123 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| |||| |||| |||| | | |||||| || ||||| | | |||||| |||| || |||| |
|
|
| T |
33622657 |
aagaggttaggtgaatagaaagcaacaatgttgttccctgtaacatgttcgaaacacgagattgctaaggccattaaaatctgaggttgatactctcttt |
33622558 |
T |
|
| Q |
124 |
ttaatatggttttaaaggcctcttggttaaccgattttgcaagttctattgacttaataagttcttctaactcaggttcaatatcaactgaggatcctct |
223 |
Q |
| |
|
||| |||||||||||||| |||| || || |||||| ||| || | ||||||||||| ||||||| ||||||||||||||||||| ||||||||| | |
|
|
| T |
33622557 |
ttagtatggttttaaagggatctttttttactgattttacaatttgtgttgacttaatatgttcttcaaactcaggttcaatatcaatggaggatccttt |
33622458 |
T |
|
| Q |
224 |
aattttgcgtaaggcttttttagct |
248 |
Q |
| |
|
||| ||||||||||||||| |||| |
|
|
| T |
33622457 |
gattatgcgtaaggctttttcagct |
33622433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 33563069 - 33562979
Alignment:
| Q |
27 |
aggttaggtgaatagaaagcgacgatgttgatcccggtaagttgttggaaaaatgggattgcaaatgccatcaccaagtgaggtcgatatt |
117 |
Q |
| |
|
|||||||||| |||||| || || ||||||||||| || |||||||| |||| || || |||| ||| |||||||||||||||||||||| |
|
|
| T |
33563069 |
aggttaggtgcatagaatgcaaccatgttgatccccgtgagttgttgaaaaagcggaatagcaactgctatcaccaagtgaggtcgatatt |
33562979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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