View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15689_low_5 (Length: 351)
Name: NF15689_low_5
Description: NF15689
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15689_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 31476756 - 31476446
Alignment:
| Q |
19 |
acagaggttgagataatccaaagctggatnnnnnnntattatgatgaagttaatatataatatgggggatgtgtttgttagtttttggaaacatggcact |
118 |
Q |
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| T |
31476756 |
acagaggttgagataatccaaagctggataaaaaaatattatgatgaagttaatatataatatgggggatgtgtttgttagtttttggaaacatggcact |
31476657 |
T |
|
| Q |
119 |
taaataaattatcctactcagatttattttgtgcatgtaacatcccaagatttatttatgaattaatctttattatcttactgcttagatttattttgt- |
217 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31476656 |
taaataaattatcctactcagatttattttgctcatgtaacatcccaagaattatttatgaattaatctttattatcttactccttagatttattttgta |
31476557 |
T |
|
| Q |
218 |
nnnnnnnntagttcattagtagttgaaccttaattacgttgctaaccaaaagaaaactagggatgaaggagctaaagaagaacaagaggaaaattggaac |
317 |
Q |
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| T |
31476556 |
aaaaaaaatagttcattagtagttgaaccttaattacgttgctaaccaaaagaaaactagggatgaaggagctaaagaagaacaagaggaaaattggaac |
31476457 |
T |
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| Q |
318 |
aaatcaagggt |
328 |
Q |
| |
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||||||||||| |
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| T |
31476456 |
aaatcaagggt |
31476446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 328
Target Start/End: Original strand, 31468082 - 31468392
Alignment:
| Q |
19 |
acagaggttgagataatccaaagctggatnnnnnnntattatgatgaagttaatatataatatgggggatgtgtttgttagtttttggaaacatggcact |
118 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| |||||||||| |||||||| |
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| T |
31468082 |
acagaggttcagataatccaaagctggataaaagaatattatgatgaagttaatatataatattggggatgt--ttgttaatttttggaaagatggcact |
31468179 |
T |
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| Q |
119 |
taaataaattatcctactc---agatttattttgtgcatgtaacatcccaagatttatttatgaattaatctttattatcttactgcttagatttatttt |
215 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||| |
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| T |
31468180 |
taaataaattatcctactccttagatttattttgttcatgtaacatcccaagaattatttatgaattaatctttattatcttaatccttagacttatttt |
31468279 |
T |
|
| Q |
216 |
gtnnnnnnnntagttcattagtagttgaaccttaattacgttgctaaccaaaagaaaactagggatgaaggagctaaagaagaacaagaggaaaattgga |
315 |
Q |
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|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31468280 |
gtaaaataaatagttgattagtagttgaaccttaattacgttgctaaccaaaagaaaactagggatgaaagagctaaagaagaacaagaggaaaattgga |
31468379 |
T |
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| Q |
316 |
acaaatcaagggt |
328 |
Q |
| |
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||||||||||||| |
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| T |
31468380 |
acaaatcaagggt |
31468392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 277
Target Start/End: Original strand, 31466844 - 31467092
Alignment:
| Q |
19 |
acagaggttgagataatccaaagctggatnnnnnnntattatgatgaagttaatatataatatgggggatgtgtttgttagtttttggaaacatggcact |
118 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| | ||||| ||| |||||||| |
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| T |
31466844 |
acagaggttgagataatccaaagctggataatacaatattatgat-------atatataatatgggggatatgtttgtaaatttttacaaagatggcact |
31466936 |
T |
|
| Q |
119 |
taaataaattatcctactcagatttattttgtgcatgtaacatcccaagatttatttatgaattaatctttattatcttactgcttagatttattttgtn |
218 |
Q |
| |
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||||||| |||||| | ||| || ||||| ||||||||||||||| |||||||| |||||||||||||||||||||| || |||||||||||| |
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| T |
31466937 |
taaataagttatccca---agaattcttttggtactgtaacatcccaagaattatttatcaattaatctttattatcttactcctatgatttattttgta |
31467033 |
T |
|
| Q |
219 |
nnnnnnntagttcattagtagttgaaccttaattacgttgctaaccaaaagaaaactag |
277 |
Q |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31467034 |
aaaaaaatagttgattagtagttgaaccttaattacgttggtaaccaaaagaaaactag |
31467092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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