View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1568_high_3 (Length: 240)
Name: NF1568_high_3
Description: NF1568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1568_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 46161879 - 46162084
Alignment:
| Q |
18 |
atatgctgccacatataatcatttattttcttgtcaaactttttctcttaacaataaacatcttcccagaaaaatatataattatcttcttcggctgtca |
117 |
Q |
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| T |
46161879 |
atatgctgccacatat---catttattttcttgtcaaactttttctcttaacaataaacatcttcccagaacaatatataattatcttcttcagctgtca |
46161975 |
T |
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| Q |
118 |
actggggtgggaacaaatggcgaagcctactttttgttca----atatgagaacataactgcatgttgctttaatggagatgactagttcagtatgatga |
213 |
Q |
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| T |
46161976 |
actggggtgggaacaaatggcgaagcctactttttgttcaatatatatgggaacataactgcatgttgctttaatggagatgactagttcagtatgatga |
46162075 |
T |
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| Q |
214 |
agctgacag |
222 |
Q |
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| T |
46162076 |
agctgacag |
46162084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 46245279 - 46245173
Alignment:
| Q |
116 |
caactggggtgggaacaaatggcgaagcctactttttgttcaatatgagaacataactgcatgttgctttaatggagatgactagttcagtatgatgaag |
215 |
Q |
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| T |
46245279 |
caactggggtgggaacaaatggtgaagcctacgttttgttcaatatgggaacataactgcatgatgcttcaatggagatgactagttcagtatgatgaag |
46245180 |
T |
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| Q |
216 |
ctgacag |
222 |
Q |
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| T |
46245179 |
ctgacag |
46245173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 46254967 - 46254862
Alignment:
| Q |
116 |
caactggggtgggaacaaatggcgaagcctactttttgttcaatatgagaacataactgcatgttgctttaatggagatgactagttcagtatgatgaag |
215 |
Q |
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| T |
46254967 |
caactgggttgggaacatttggtgaagcctactatttgttcaatatgggaacatagctgcatgatgcttcaatggagatgactagttcagtacgatgaag |
46254868 |
T |
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| Q |
216 |
ctgaca |
221 |
Q |
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|||||| |
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| T |
46254867 |
ctgaca |
46254862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 46169210 - 46169285
Alignment:
| Q |
20 |
atgctgccacatataatcatttattttcttgtcaaactttttctcttaacaataaacatcttcccagaaaaatatata |
97 |
Q |
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| T |
46169210 |
atgctgctacatataatcatttattttcttgtcaaactttt--tcttaacgataaacattttcccagaacaatatata |
46169285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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