View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1568_low_1 (Length: 402)
Name: NF1568_low_1
Description: NF1568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1568_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 24 - 387
Target Start/End: Original strand, 18980134 - 18980495
Alignment:
| Q |
24 |
atttgatttgattttgataggtggatttgacactgctcatgctgctgcaaggtggggactattcttttgagtggatttgagtaatattatttgcatttta |
123 |
Q |
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| T |
18980134 |
atttgatttgattttgataggtggatttgacactgctcatgctgctgcaaggtggggactattcttttgagtgga-ttgagtaatattatttgcatttta |
18980232 |
T |
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| Q |
124 |
atttgttttggctacttatattt-tnnnnnnnnctgataatttttgtgtatagagcatatgatagggctgctgttatgtttaggggagttgatgctgata |
222 |
Q |
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| T |
18980233 |
atttgttttggctacttatatttaaaaaaaaaactgataatttttgtgtatagagcatatgatagggctgctgttatgtttaggggagttgatgctgata |
18980332 |
T |
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| Q |
223 |
taaactttaatttgagtgattatgaggacttgaaacaggtnnnnnnnnttatgactatgatcaatttctgtttgaatatcaaattttgtgtgaattaatt |
322 |
Q |
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| T |
18980333 |
taaactttaatttgagtgattatgaggacttgaaacaggtaaaaaaaattatgac--tgatcaatttctgtttgaatatcaatttttgtgtgaattaatt |
18980430 |
T |
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| Q |
323 |
cattaagtttaaaatttaattggaatgtagatgagaggtttgagcaaggaagaatttgtcctaag |
387 |
Q |
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| T |
18980431 |
cattaagtttaaaatttaattggaatgtagatgagaggtttgagcaaggaagaatttgtcctaag |
18980495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 1080576 - 1080494
Alignment:
| Q |
273 |
atgactatgatcaatttctgtttgaatatcaaattttgtgtgaattaattcattaagtttaaaatttaattggaatgtagatgagag |
359 |
Q |
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| T |
1080576 |
atgactatgaccagtttccgtttgaatatcaatttgtgtgtggatt----caataagcttataatttaattagaatgtagatgagag |
1080494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 358
Target Start/End: Original strand, 2836484 - 2836565
Alignment:
| Q |
273 |
atgactatgatcaatttctgtttgaatatcaaattttgtgtgaattaattcattaagtttaaaatttaattggaatgtagatgaga |
358 |
Q |
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| T |
2836484 |
atgactatgaccagtttccgtttgaatatcaatttgtgtgtg----gattcaataagcttataatttaattagaatgtagatgaga |
2836565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 21890986 - 21890939
Alignment:
| Q |
29 |
atttgattttgataggtggatttgacactgctcatgctgctgcaaggt |
76 |
Q |
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| T |
21890986 |
atttgatttttgtaggtggatttgacacagctcatgctgctgctaggt |
21890939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 22616788 - 22616717
Alignment:
| Q |
173 |
tagagcatatgatagggctgctgttatgtttaggggagttgatgctgatataaactttaatttgagtgatta |
244 |
Q |
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| T |
22616788 |
tagagcctatgatcgagctgctattaagtttaggggagttggtgctgacataaatttcaatttgaatgatta |
22616717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 41049404 - 41049451
Alignment:
| Q |
29 |
atttgattttgataggtggatttgacactgctcatgctgctgcaaggt |
76 |
Q |
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| T |
41049404 |
atttgatttttgtaggtggatttgacacagctcatgctgctgctaggt |
41049451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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