View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1568_low_3 (Length: 296)
Name: NF1568_low_3
Description: NF1568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1568_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 25 - 209
Target Start/End: Original strand, 35419272 - 35419456
Alignment:
| Q |
25 |
atcaataatagttctttccaaccactcctaaaattatacgtatctagaatcatgtcaattaaaaacaacacctaaatgagaaccaacccaatgttatttt |
124 |
Q |
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| T |
35419272 |
atcaataatagttctttccaatcactcctaaaattatacgtatctagaatcatgtgaattaaaaacgacacctaaatgagaatcaaaccaatgttatttt |
35419371 |
T |
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| Q |
125 |
gaccattgacattccatgaagtgaggtgaaactgtctaattattttgtataaaaaatcacacacaataggtcacaattgagttat |
209 |
Q |
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| T |
35419372 |
gaccattgacattccatgaagtgaggtgaaattgtctaattattttgtataaaaaatcacacacaatgggtcacaattgatttat |
35419456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 35419519 - 35419602
Alignment:
| Q |
207 |
tatcttaaaatagttttaattttcctcaatttttccatacattttatcaagatcttgcgccaaattatagagctagaataatct |
290 |
Q |
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| T |
35419519 |
tatcttaaaatagttttaattttcctcagtttttccatacattttatcaagatcttgcgccaaattatagagctagaataatct |
35419602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 35428403 - 35428581
Alignment:
| Q |
25 |
atcaataatagttctttccaaccactcctaaaattatacg-ta--tctagaatcatgtcaattaaaaacaacacctaaatgagaaccaacccaatgttat |
121 |
Q |
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| T |
35428403 |
atcaataatagttctttccaaccactcctgaaatgaaaaaatacttctataatcatgtgaattaaaaacgacacctaaatgagaaccaaaccaaacctat |
35428502 |
T |
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| Q |
122 |
tttgaccattgacattccatgaagtgaggtgaaactgtctaattattttgtataaaaaatcacacacaataggtcacaatt |
202 |
Q |
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| T |
35428503 |
tatgaccattgacattccatgaagagaggtgaaattgtctcattagtttatctaaaaaa--acacacaatgggtcacaatt |
35428581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 207 - 288
Target Start/End: Original strand, 35428650 - 35428732
Alignment:
| Q |
207 |
tatcttaaaatagttttaattttcctcaatttttccatacatttt-atcaagatcttgcgccaaattatagagctagaataat |
288 |
Q |
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| T |
35428650 |
tatcttgaaatagtttaaattttcctcaatttttccatactttttgttcaagatcttgcgccgaattatagagctaaaataat |
35428732 |
T |
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