View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1568_low_4 (Length: 245)
Name: NF1568_low_4
Description: NF1568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1568_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 30252288 - 30252064
Alignment:
| Q |
4 |
atatctatatctaatgaggtacaaaatagaacagaaagatatccatgtgttttaaatagaattttaaatccacctctgttgaaattgaaacatcaactta |
103 |
Q |
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| T |
30252288 |
atatctatatctaatgaggtacaaaatagagcagaaagatatccatgtgttttaaatagaattttaaatccacctctgttgaaattgaaacatcaactta |
30252189 |
T |
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| Q |
104 |
aagccaactctgtagcttaaacagacaactagcgaagtagaaggtgataaatcatattattaccttttgatcaattagtgccacatccatgcaatgttta |
203 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
30252188 |
aagcaaactatgtagcttaaacagacaactagcgaagtagaaggtgataaatcatattgttaccttttgatcaattagtgccacatccatgcagtgttta |
30252089 |
T |
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| Q |
204 |
tcatcataattttccacacacttct |
228 |
Q |
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||||||||||||||||||||||||| |
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| T |
30252088 |
tcatcataattttccacacacttct |
30252064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 30184524 - 30184590
Alignment:
| Q |
151 |
taaatcatattattaccttttgatcaattagtgccacatccatgcaatgtttatcatcataattttc |
217 |
Q |
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|||| |||||| |||||||||||||||||||||||||| ||||| ||| || |||||||||||| |
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| T |
30184524 |
taaaacatatttttaccttttgatcaattagtgccacaggtatgcattgtgtactatcataattttc |
30184590 |
T |
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