View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15690_high_1 (Length: 236)
Name: NF15690_high_1
Description: NF15690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15690_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 29917196 - 29916977
Alignment:
| Q |
1 |
ttttgtacaatttcatattgaactaatttgatgtgatgttaattgaattaaccgatcaattaactaactgaatttgatgtgnnnnnnncatatggccaca |
100 |
Q |
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| T |
29917196 |
ttttgtacaatttcatattgaactaatttgatgtgatgttaattgaattaaccgatcaattaactaactcaatttgatgtgtttttttcatatggccaca |
29917097 |
T |
|
| Q |
101 |
cagttctgcgaatttaccaatatgccaggttcaataaataaataatgagtaaatttaagtacatatggctatgaatgcatgtttggtagattaaattatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29917096 |
cagttctgcgaatttaccaatatgccaggttcaataaataaataatgagtaaatttaagtacacatggctatgaatgcatgtttggtagattaaattatt |
29916997 |
T |
|
| Q |
201 |
ttgctatcgtgtgagtgtgc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
29916996 |
ttgctatcgtgtgagtgtgc |
29916977 |
T |
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