View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15690_high_1_N (Length: 527)
Name: NF15690_high_1_N
Description: NF15690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15690_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 4 - 458
Target Start/End: Original strand, 98419 - 98873
Alignment:
| Q |
4 |
tggaggcggtggagaacgtgacgacgatgaggtcgatggtggacaaggaggagaacctgacggaggaaagatcaatggaggaggagaacgtgaagacgga |
103 |
Q |
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| T |
98419 |
tggaggcggtggagaacgtgacgacgatgaggtcgatggtggacaaggaggagaacctgacggaggaaagatcaatggaggaggagaacgtgaagacgga |
98518 |
T |
|
| Q |
104 |
gaggtcgacggcgacgatgacaaagaagaagaacaggaaaaggaagtggaagtggagacagaacgttcagatgaagaatcgaacaatgagtcgaagaaat |
203 |
Q |
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| T |
98519 |
gaggtcgacggcgacgatgacaaagacgaagaacaggaaaaggaagtggaagtggagacagaacgttcagatgaagaatcgaacaatgagtcgaagaaat |
98618 |
T |
|
| Q |
204 |
tatggaatctgaggccgaggaagccaaccaagaaggaagagaagaagagcggcggtggaggaagttcgaggaagccgacgactcgatctcagcgtaaggc |
303 |
Q |
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| T |
98619 |
tatggaatctgaggccgaggaagccaaccaagaaggaagagaagaagagcggcggtggaggaagttcgaggaagccgacgactcgatctcagcgtaaggc |
98718 |
T |
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| Q |
304 |
ggagatgccgcaaaggatggagctgaagctgactcttacaaatgaagagatcgaacatgatttcttactcatgactggtcagaagccgccaaagaaaccg |
403 |
Q |
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| T |
98719 |
ggagatgccgcaaaggatggagctgaagctgactcttacaaatgaagagatcgaacatgatttcttactcatgactggtcagaagccgccaaagaaaccg |
98818 |
T |
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| Q |
404 |
attaagagatcaacaaaggttcagaaatctgttgaggtaatcatattctcaccct |
458 |
Q |
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| T |
98819 |
attaagagatcaacaaaggttcagaaatctgttgaggtaatcatattctcaccct |
98873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 455
Target Start/End: Original strand, 25907359 - 25907463
Alignment:
| Q |
351 |
agatcgaacatgatttcttactcatgactggtcagaagccgccaaagaaaccgattaagagatcaacaaaggttcagaaatctgttgaggtaatcatatt |
450 |
Q |
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|||| |||||||||||| | ||| | |||||||||||||| ||||| ||||||| ||||||| ||| || |||| |||| | ||||| |||||||||| |
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| T |
25907359 |
agattgaacatgatttcatgctcttcactggtcagaagccaccaaaaaaaccgaataagagaccaaaaattgttcggaaaacccttgagataatcatatt |
25907458 |
T |
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| Q |
451 |
ctcac |
455 |
Q |
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||||| |
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| T |
25907459 |
ctcac |
25907463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 267
Target Start/End: Original strand, 25907170 - 25907260
Alignment:
| Q |
176 |
gaagaatcgaacaatgagtcgaagaaattatggaatctgaggccgaggaagccaaccaagaaggaagagaagaagagcggcggtggaggaag |
267 |
Q |
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| T |
25907170 |
gaagaatcaaacaatgagcgggtgaagttatggaatctgaggccggggaagctagcta-gaaggaagagaagcagagcggcggtggtggaag |
25907260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 25907142 - 25907093
Alignment:
| Q |
203 |
ttatggaatctgaggccgaggaagccaaccaagaaggaagagaagaagag |
252 |
Q |
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| T |
25907142 |
ttatggaatctaaggtcgaggaagccaactaagaaggaaaagaagcagag |
25907093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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