View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15690_high_6 (Length: 308)

Name: NF15690_high_6
Description: NF15690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15690_high_6
NF15690_high_6
[»] chr6 (1 HSPs)
chr6 (9-308)||(30769960-30770256)


Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 308
Target Start/End: Original strand, 30769960 - 30770256
Alignment:
Q  9 gaagaatatgatcgtatagcatctgcatcttctaccatgaaaccttcatcatcaagactaagagtgttcttgttcttcacaaaaccagagtccacacttt 108  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||    
T  30769960 gaagaatatgatcgtatagcatcggcatcttctacaatgaaaccttcatcatcaagactaagagtgtttttgttcttcacaaaaccagataccacacttt 30770059  T
Q  109 caatgggatcacttcttgatgatgcaaaatctgagacatggtttgttgatgcactcaacaactcagggattctctcaagaggtgtgtcagattctgcagg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30770060 caatgggatcacttcttgatgatgcaaaatctgagacatggtttgttgatgcactcaacaactcagggattctctcaagaggtgtgtcagattcagcagg 30770159  T
Q  209 agattcttttgtgaatcttgataatgttcctgctagtggtgattcaagcaataacttagaatctcaagtagaatcactgactctgcttgaaaacaacaac 308  Q
    ||||||||||||||||||||||| |||||||||||   ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  30770160 agattcttttgtgaatcttgatagtgttcctgcta---gtgattcaagcaataacttggaatctcaagtagaatcattgactctgcttgaaaacaacaac 30770256  T

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