View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15691_high_7 (Length: 261)

Name: NF15691_high_7
Description: NF15691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15691_high_7
NF15691_high_7
[»] chr8 (9 HSPs)
chr8 (1-250)||(3388973-3389222)
chr8 (11-250)||(31177888-31178127)
chr8 (25-170)||(3366320-3366465)
chr8 (80-231)||(3319929-3320080)
chr8 (140-250)||(31178529-31178639)
chr8 (140-250)||(31179041-31179151)
chr8 (132-250)||(3405485-3405593)
chr8 (134-170)||(3430518-3430554)
chr8 (16-78)||(3319844-3319906)
[»] chr5 (4 HSPs)
chr5 (11-242)||(15805269-15805493)
chr5 (134-192)||(12597423-12597481)
chr5 (11-100)||(30419931-30420020)
chr5 (26-79)||(15805236-15805289)
[»] chr3 (1 HSPs)
chr3 (33-250)||(6903441-6903657)
[»] chr2 (1 HSPs)
chr2 (130-222)||(14765581-14765672)
[»] chr7 (3 HSPs)
chr7 (123-224)||(13938456-13938556)
chr7 (123-224)||(39287484-39287584)
chr7 (134-178)||(8369937-8369981)
[»] scaffold0468 (1 HSPs)
scaffold0468 (137-198)||(2904-2965)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 3389222 - 3388973
Alignment:
Q  1 ccgtcaccccatgtaaaaatggatccatcagctgaagaggaagcacaaccatcacttgatgtgaaaatggaaccatcagttgttgtcaagaatgaaccat 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3389222 ccgtcacccaatgtaaaaatggatccatcagctgaagaggaagtacaaccatcacttgatgtgaaaatggaaccatcagttgttgtcaagaatgaaccat 3389123  T
Q  101 taccgaagacaagtagaaaaaactttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgag 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3389122 tactgaagacaagtagaaaaaactttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgag 3389023  T
Q  201 cacgcctattgtcctaatatggaactcccttgtatgtgttttgtaatatt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3389022 cacgcctattgtcctaatatggaactcccttgtatgtgttttgtaatatt 3388973  T

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Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 31177888 - 31178127
Alignment:
Q  11 atgtaaaaatggatccatcagctgaagaggaagcacaaccatcacttgatgtgaaaatggaaccatcagttgttgtcaagaatgaaccattaccgaagac 110  Q
    |||| |||| ||| ||||||||||||||||| |  || ||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||||    
T  31177888 atgtgaaaacggagccatcagctgaagaggacgtgcagccatcacttgatgtgaaaacggaaccattacttgttgtcaagaatgaaccaataccgaagac 31177987  T
Q  111 aagtagaaaaaactttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctatt 210  Q
    || |||||||| ||| || ||||||||||||||| ||||||||||||||||||||| ||| |||||||||||   ||| ||||||||| |||| ||  ||    
T  31177988 aaatagaaaaatcttcacaagacttgcaaagagactgggagaatgtttatgcttgatccagaattgagatctttgcaaattttgattgggcacaccggtt 31178087  T
Q  211 gtcctaatatggaactcccttgtatgtgttttgtaatatt 250  Q
    ||||||| |||||| | |||||||||||||||||||||||    
T  31178088 gtcctaacatggaatttccttgtatgtgttttgtaatatt 31178127  T

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Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 3366320 - 3366465
Alignment:
Q  25 ccatcagctgaagaggaagcacaaccatcacttgatgtgaaaatggaaccatcagttgttgtcaagaatgaaccattaccgaagacaagtagaaaaaact 124  Q
    ||||||||||||||||||| |||||||||||   |||||||||||||||||||| ||||||||||||||||||||||||| || |||| |||||||| ||    
T  3366320 ccatcagctgaagaggaagtacaaccatcacccaatgtgaaaatggaaccatcacttgttgtcaagaatgaaccattaccaaacacaaatagaaaaatct 3366419  T
Q  125 ttacgagacttgcaaagagagtgggagaatgtttatgcttgaacca 170  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||    
T  3366420 ttacaagacttgcaaagagagtgggagaatgtttatgcatgaacca 3366465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 80 - 231
Target Start/End: Original strand, 3319929 - 3320080
Alignment:
Q  80 ttgttgtcaagaatgaaccattaccgaagacaagtagaaaaaactttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgaga 179  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||    
T  3319929 ttgttgtcaaaaatgaaccattaccgaagacaagtagaaaaatctttacaagactggcaaagagagtgggaaaatgtttatgcttgaaccaaaattgaga 3320028  T
Q  180 tctcaacaatttttgattgagcacgcctattgtcctaatatggaactccctt 231  Q
    ||||| ||||||||| |||| || |||| ||||| ||| ||| || ||||||    
T  3320029 tctcagcaatttttgtttgaacatgcctgttgtcataacatgaaattccctt 3320080  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 31178529 - 31178639
Alignment:
Q  140 agagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatggaactcccttgtatgtgt 239  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||   ||| ||||||||| |||| ||  ||||||||| |||||| | ||||||||||||    
T  31178529 agagactgggagaatgtttatgcttgatccagaattgagatctttgcaaattttgattgggcacaccggttgtcctaacatggaatttccttgtatgtgt 31178628  T
Q  240 tttgtaatatt 250  Q
    |||||||||||    
T  31178629 tttgtaatatt 31178639  T

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Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 140 - 250
Target Start/End: Original strand, 31179041 - 31179151
Alignment:
Q  140 agagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatggaactcccttgtatgtgt 239  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||   ||| ||||||||| |||| ||  ||||||||| |||||| | ||||||||||||    
T  31179041 agagactgggagaatgtttatgcttgatccagaattgagatctttgcaaattttgattgggcacaccggttgtcctaacatggaatttccttgtatgtgt 31179140  T
Q  240 tttgtaatatt 250  Q
    |||||||||||    
T  31179141 tttgtaatatt 31179151  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 250
Target Start/End: Complemental strand, 3405593 - 3405485
Alignment:
Q  132 acttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatggaactccctt 231  Q
    |||||||||||||||||||| |||||||||||||||||| |||||||||||||         ||| | |||||||| ||||||||||| || | ||||||    
T  3405593 acttgcaaagagagtgggaggatgtttatgcttgaaccagaattgagatctca---------gatagggcacgcct-ttgtcctaatacgggattccctt 3405504  T
Q  232 gtatgtgttttgtaatatt 250  Q
    ||||||||||| |||||||    
T  3405503 gtatgtgttttctaatatt 3405485  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 3430518 - 3430554
Alignment:
Q  134 ttgcaaagagagtgggagaatgtttatgcttgaacca 170  Q
    ||||||||||||||||||||||||||||| |||||||    
T  3430518 ttgcaaagagagtgggagaatgtttatgcatgaacca 3430554  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 3319844 - 3319906
Alignment:
Q  16 aaaatggatccatcagctgaagaggaagcacaaccatcacttgatgtgaaaatggaaccatca 78  Q
    |||| ||| ||||||||||||||||||| ||||  ||||| | ||||||||||||| ||||||    
T  3319844 aaaacggagccatcagctgaagaggaagtacaattatcacctaatgtgaaaatggagccatca 3319906  T

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Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 15805269 - 15805493
Alignment:
Q  11 atgtaaaaatggatccatcagctgaagaggaagcacaaccatcacttgatgtgaaaatggaaccatcagttgttgtcaagaatgaaccattaccgaagac 110  Q
    |||| ||||| || ||||||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||   |||||||||||||||||||||  |    
T  15805269 atgtgaaaatagagccatcagctaaagaggaagcacaaccatcacccgatgtgaaaatggaaccatcacttgt---caagaatgaaccattaccgaacgc 15805365  T
Q  111 aagtagaaaaaactttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctatt 210  Q
    || ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||     ||||| ||||||||| ||| |||||||    
T  15805366 aaatagaaaaatatttacaagacttgcaaagagagtgggagaatgtttatgcttgaaccagaaatgag----taacaacttttgattgggcatgcctatt 15805461  T
Q  211 gtcctaatatggaactcccttgtatgtgtttt 242  Q
    ||||| |||||||| |||| ||||||||||||    
T  15805462 gtcctgatatggaattcccatgtatgtgtttt 15805493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 12597423 - 12597481
Alignment:
Q  134 ttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttt 192  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||| || ||||||||    
T  12597423 ttgcaaagagagtgggagaatgtttgtgcttgaaccaaaattgagatatccacaatttt 12597481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 30419931 - 30420020
Alignment:
Q  11 atgtaaaaatggatccatcagctgaagaggaagcacaaccatcacttgatgtgaaaatggaaccatcagttgttgtcaagaatgaaccat 100  Q
    |||| ||||| ||||||||| |||||||||||| |||| |||| |||||||||||||  ||  ||||| || || || ||||||||||||    
T  30419931 atgtgaaaatagatccatcacctgaagaggaagtacaatcatcccttgatgtgaaaaatgaggcatcacttattatccagaatgaaccat 30420020  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 15805236 - 15805289
Alignment:
Q  26 catcagctgaagaggaagcacaaccatcacttgatgtgaaaatggaaccatcag 79  Q
    |||||||||||||||| | ||||||||||| | |||||||||| || |||||||    
T  15805236 catcagctgaagaggatgtacaaccatcacctaatgtgaaaatagagccatcag 15805289  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 250
Target Start/End: Complemental strand, 6903657 - 6903441
Alignment:
Q  33 tgaagaggaagcacaaccatcacttgatgtgaaaatggaaccatcagttgttgtcaagaatgaaccattaccgaagacaagtagaaaaaactttacgaga 132  Q
    |||||| ||||  |||||||||||||||||||| ||||||||||||  | |  |||| ||||  |||||||| |||| || || |||||  |||   |||    
T  6903657 tgaagatgaagtgcaaccatcacttgatgtgaagatggaaccatcacctatcatcaacaatgggccattacctaagagaaatacaaaaatatttgtaaga 6903558  T
Q  133 cttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatggaactcccttg 232  Q
     || |||||| | |||||||||||||||||||||| |  ||| |||||||||| ||||||| |||| |||| ||| |||||| ||| | ||| | |||||    
T  6903557 ttttcaaagaaattgggagaatgtttatgcttgaatcggaatagagatctcaataatttttaattgtgcactcct-ttgtccaaattttgaatttccttg 6903459  T
Q  233 tatgtgttttgtaatatt 250  Q
    ||| ||||||||||||||    
T  6903458 tatatgttttgtaatatt 6903441  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 14765672 - 14765581
Alignment:
Q  130 agacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatgg 222  Q
    ||||| ||||||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||||||| |||| |||  ||||||||||||||    
T  14765672 agactcgcaaagagagtaggaaaatgtttatgcttgaaccaaaatcgagatctcaacaatttttgattaagcaggcc-gttgtcctaatatgg 14765581  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 13938456 - 13938556
Alignment:
Q  123 ctttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatgg 222  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||| | |||| ||| ||||  |||||||||||| |||| |||| |||| | ||||||    
T  13938456 ctttacaagacttgcaaagagagttggaaaatgtttatgcttgaacaaaaattaaga-ctcataaatttttgattgggcacacctaatgtcatgatatgg 13938554  T
Q  223 aa 224  Q
    ||    
T  13938555 aa 13938556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 39287484 - 39287584
Alignment:
Q  123 ctttacgagacttgcaaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattgagcacgcctattgtcctaatatgg 222  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||| | |||| ||| ||||  |||||||||||| |||| |||| |||| | ||||||    
T  39287484 ctttacaagacttgcaaagagagttggaaaatgtttatgcttgaacaaaaattaaga-ctcataaatttttgattgggcacacctaatgtcatgatatgg 39287582  T
Q  223 aa 224  Q
    ||    
T  39287583 aa 39287584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 8369981 - 8369937
Alignment:
Q  134 ttgcaaagagagtgggagaatgtttatgcttgaaccataattgag 178  Q
    |||||||| |||| ||| ||||||||||||||||||| |||||||    
T  8369981 ttgcaaagggagtaggaaaatgtttatgcttgaaccaaaattgag 8369937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 2965 - 2904
Alignment:
Q  137 caaagagagtgggagaatgtttatgcttgaaccataattgagatctcaacaatttttgattg 198  Q
    |||||| |||||||||||||||||||||||| || ||| ||| |||| ||||||||| ||||    
T  2965 caaagaaagtgggagaatgtttatgcttgaatcagaatagaggtctcgacaatttttaattg 2904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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