View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15691_low_1 (Length: 702)
Name: NF15691_low_1
Description: NF15691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15691_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 28960489 - 28960690
Alignment:
| Q |
23 |
cacctcaccaaaattttcactactatctttcttctcctattcaccactcccgtgaatcttctacttctcgttactctgcttccttgaaaaaccctaggat |
122 |
Q |
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| T |
28960489 |
cacctcaccaaaattttcactactatctttcttcccctattcaccactctcgtgaatcttctacttctcgttactctgcttccttgaaaaaccctaggat |
28960588 |
T |
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| Q |
123 |
ttcttcttcttggaagaagctgaataatagaaatggtggtgatgatcttgatgaagaagatgaggatgatgaaggtgtttatgattctgggaggaatgtt |
222 |
Q |
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| T |
28960589 |
ttcttcttcttggaagaagctaaataatagaaatggtggtgatgatcttgatgaagaagatgaggatgatgaaggtgtttatgattctgggaggaatgtt |
28960688 |
T |
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| Q |
223 |
ag |
224 |
Q |
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|| |
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| T |
28960689 |
ag |
28960690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 533 - 692
Target Start/End: Original strand, 28961027 - 28961186
Alignment:
| Q |
533 |
tgcgtgcatgcctcatatcaaagcaattggattctttcatgctttctttaaacttttcagtatcaaaagtctcaactttttcaagtttgaactcaatcaa |
632 |
Q |
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| T |
28961027 |
tgcgtgcatgcctcatatcaaagcaattggattctttcatgctttctttaaacttttcagtatcaaaagtctcaactttttcaagtttgaactcaatcaa |
28961126 |
T |
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| Q |
633 |
ctggtcagagtcaatggtgtatgcattgtgaaatgacagaactgccctcttcttctctct |
692 |
Q |
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| T |
28961127 |
ctggtcagagtcaatggtgtatgcattgtgaaatgacataactgccctcttcttctctct |
28961186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 288 - 451
Target Start/End: Original strand, 28960754 - 28960917
Alignment:
| Q |
288 |
gggtgctagtaaaagctacaagcctcgtgtcattcttaaggtaacaccttcctcctcctgcatttttcatacctagttggttttgccctgacccaatgta |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
28960754 |
gggtgctagtaaaagctacaagcctcgtgtcattcttaaggtaacaccttcctcctcctgcatttttcatacctagttggttttgctctgacttgatgta |
28960853 |
T |
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| Q |
388 |
tatttgatatcacgatagatgtgtcagaatcacggtgatccgttgtaattttggagaagccaca |
451 |
Q |
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| T |
28960854 |
tatttgatatcacgatagatatgtcagaatcacggtgatccattgtaattttggagaagccaca |
28960917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 430 - 468
Target Start/End: Original strand, 28960918 - 28960956
Alignment:
| Q |
430 |
ttgtaattttggagaagccacaaagcagatgttacattg |
468 |
Q |
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| T |
28960918 |
ttgtaattttggagaagccacaaagtagatgttacattg |
28960956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 447
Target Start/End: Original strand, 33944753 - 33944816
Alignment:
| Q |
384 |
tgtatatttgatatcacgatagatgtgtcagaatcacggtgatccgttgtaattttggagaagc |
447 |
Q |
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| T |
33944753 |
tgtatgtttgatatcacggtggatgtgttagaatcacggtgatccatcgtgattttgcagaagc |
33944816 |
T |
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