View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15691_low_10 (Length: 250)
Name: NF15691_low_10
Description: NF15691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15691_low_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 38305483 - 38305247
Alignment:
| Q |
14 |
tcatcaccagtttccaattgttccagtgacatagcttcgaaggcctagattacatttcaacattgtaaattattataatgtttctaaaatcgcagattat |
113 |
Q |
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| T |
38305483 |
tcatcaccagtttccaattgttccagtgacatagcttcgaaggcctagattacatttcaacattgtaaattattataatgtttctaaaatcgcagattat |
38305384 |
T |
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| Q |
114 |
tattgaaatagaaatgctaagaaacttcaatgaagaaagagattcaacaacaaaatacctgcgcatgagagatcgaagacggagagtcaccgtaaataga |
213 |
Q |
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| T |
38305383 |
tattgaaatagaaatgctaagaaacttcaatgaagaaagagattcaacaacaaaatacctgcgcatgagagatcgaagacggagagtcaccgtaaataga |
38305284 |
T |
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| Q |
214 |
cggcggagacatggcagagaggaagacggagtgacgg |
250 |
Q |
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| T |
38305283 |
cggcggagacatggcagagaggaagacggagtgacgg |
38305247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 38320272 - 38320217
Alignment:
| Q |
57 |
cctagattacatttcaacattgtaaattattataatgtttctaaaatcgcagatta |
112 |
Q |
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| T |
38320272 |
cctaaattacatttcaacactgttaattattattatgtttctaaaatcacagatta |
38320217 |
T |
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