View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15691_low_12 (Length: 235)
Name: NF15691_low_12
Description: NF15691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15691_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 698729 - 698523
Alignment:
| Q |
15 |
acttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttctaaaatatggcaatagtactttccgagcttcatcg |
114 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
698729 |
acttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttccaaaatatggcaatagtactttccgagcttcatcg |
698630 |
T |
|
| Q |
115 |
ccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
698629 |
ccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagag |
698530 |
T |
|
| Q |
215 |
cctatgc |
221 |
Q |
| |
|
||||||| |
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|
| T |
698529 |
cctatgc |
698523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Complemental strand, 767027 - 766821
Alignment:
| Q |
15 |
acttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttctaaaatatggcaatagtactttccgagcttcatcg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
767027 |
acttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttccaaaatatggcaatagtactttccgagcttcatcg |
766928 |
T |
|
| Q |
115 |
ccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
766927 |
ccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagag |
766828 |
T |
|
| Q |
215 |
cctatgc |
221 |
Q |
| |
|
||||||| |
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|
| T |
766827 |
cctatgc |
766821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 36963206 - 36963412
Alignment:
| Q |
15 |
acttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttctaaaatatggcaatagtactttccgagcttcatcg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
36963206 |
acttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcatttgtttccaaaatatggcaatagtactttccgagcttcatcg |
36963305 |
T |
|
| Q |
115 |
ccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36963306 |
ccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaatactatcctatggccaagatcttcacatgcaccacacctagag |
36963405 |
T |
|
| Q |
215 |
cctatgc |
221 |
Q |
| |
|
||||||| |
|
|
| T |
36963406 |
cctatgc |
36963412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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