View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15691_low_16 (Length: 215)
Name: NF15691_low_16
Description: NF15691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15691_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 34314803 - 34314989
Alignment:
| Q |
14 |
cacagactccaacgtaactgaccgcataaaactaaacgttggcggtaagctcttcgaaacaactctttccacaatccggtccggcggtccagactctctc |
113 |
Q |
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| T |
34314803 |
cacagactccaacgtaactgaccgcataaaactcaacgttggcggtaagctcttcgaaacaactctttccacaatccggtccggcggtccagactctctc |
34314902 |
T |
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| Q |
114 |
cttttcgcattatcaaaccgtttttccaacgacccaaacccggttttcatagaccgcgacccagaaatcttctccgtcttcctctct |
200 |
Q |
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| T |
34314903 |
cttttcgcattatcaaaccgtttttccaacgacccaaacccggttttcatagaccgcgacccagaaatcttctccgtcttcctctct |
34314989 |
T |
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Target: chr7; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 22061248 - 22061066
Alignment:
| Q |
14 |
cacagactccaacgtaactgaccgcataaaactaaacgttggcggtaagctcttcgaaacaactc-tttccacaatccggtccggcggtccagactctct |
112 |
Q |
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|||||||| |||| ||||||||||||||||| ||||||| |||||||||||||||||| | |||| ||||||| |||||| | |||||| ||||| |
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| T |
22061248 |
cacagacttaaacgcaactgaccgcataaaac-----gttggcgataagctcttcgaaacaacccctttcgacaatcctgtccggtgatccagattctct |
22061154 |
T |
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| Q |
113 |
ccttttcgcattatcaaaccgtttttccaacgacccaaacccggttttcatagaccgcgacccagaaatcttctccgtcttcctctct |
200 |
Q |
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| T |
22061153 |
cttcttcgcactctcaagccgttttttcaacgacccaaatttgattttcatagaccgcaacccataaatcttctccgtcttcctctct |
22061066 |
T |
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