View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15691_low_2 (Length: 509)

Name: NF15691_low_2
Description: NF15691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15691_low_2
NF15691_low_2
[»] chr1 (12 HSPs)
chr1 (342-493)||(269995-270143)
chr1 (121-315)||(269811-269994)
chr1 (363-493)||(49250360-49250488)
chr1 (30-208)||(28361288-28361465)
chr1 (383-490)||(14945445-14945549)
chr1 (363-449)||(49250029-49250114)
chr1 (383-490)||(14940203-14940307)
chr1 (383-490)||(14950210-14950314)
chr1 (383-490)||(14954451-14954555)
chr1 (363-490)||(14941553-14941679)
chr1 (363-490)||(14951560-14951686)
chr1 (363-490)||(14955801-14955927)
[»] chr8 (1 HSPs)
chr8 (406-492)||(8791002-8791088)
[»] chr7 (2 HSPs)
chr7 (409-472)||(6205758-6205819)
chr7 (31-106)||(35182626-35182701)
[»] chr2 (1 HSPs)
chr2 (246-325)||(32725757-32725835)


Alignment Details
Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 342 - 493
Target Start/End: Original strand, 269995 - 270143
Alignment:
Q  342 aggtggcacgcctagagagttttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacac 441  Q
    |||||||| ||||| |||||||||||||||| |||||||||  ||||||||||| |||| |||| | |||| |||||||||  |||||||||||||||||    
T  269995 aggtggcatgcctaaagagttttgtataagggattcatcat--ataggtttaagaatttgttttaa-tttaattgtatgagccgttgtaaagttgaacac 270091  T
Q  442 atgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgttat 493  Q
    ||||||||||||||||||||||||||| | |||||||||||||| |||||||    
T  270092 atgtaaaatattcaaattgaggagtattagtgaaatgaagttaccttgttat 270143  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 121 - 315
Target Start/End: Original strand, 269811 - 269994
Alignment:
Q  121 aactctttcaatttctgatgtgagaatgaatatgtcaatttcaggaattattcaaaaattgtcttgcaaatgatgattatgtcaatttcaagagtcattt 220  Q
    |||||||||||||||||||||||||||||||  ||||||||||||| |||||||||| |||| ||||||| |||||||||| |||| |  | |||||||     
T  269811 aactctttcaatttctgatgtgagaatgaat--gtcaatttcaggagttattcaaaagttgttttgcaaaggatgattatgccaatatatatagtcattc 269908  T
Q  221 tacattgtc-ttgcaagggaag-gaacctttaaaatgtgaagtgaagggaaactctaaaatttgaagctgcagaatgtgtatttgatatgtaaaaaa 315  Q
     |||||||| ||||||||  || ||||||||          |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  269909 gacattgtctttgcaaggctagcgaaccttt----------gtgaagggaaactctaaaatttgaagttgcagaatgtgtattt-atatgtaaaaaa 269994  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 363 - 493
Target Start/End: Complemental strand, 49250488 - 49250360
Alignment:
Q  363 ttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgag 462  Q
    ||||| |||| |||| ||||||||| ||||||||||||||| | ||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||||     
T  49250488 ttgtacaagggattcgtcatttataagtttaaggatttattgt-actttcgttgtataagtggttgtaaagttgaccacatgtaaaaaattcaaattgaa 49250390  T
Q  463 gagtatcaatgaaatgaagttactttgttat 493  Q
    ||||||  |||||||||||||||||||||||    
T  49250389 gagtat-gatgaaatgaagttactttgttat 49250360  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 208
Target Start/End: Original strand, 28361288 - 28361465
Alignment:
Q  30 tatgtaatgtaaggttgatttgaactatgaaattctgcaatttagatttaaactatatgtatagacaattatgagttgggaatattagcttaactctttc 129  Q
    ||||||||||||  ||||||| ||||||||||  || | ||||| ||||||| | |||| ||||| |||| |||||||| |||||||  | |||| ||||    
T  28361288 tatgtaatgtaattttgatttaaactatgaaacccttcgatttaaatttaaattttatgcatagataattctgagttggaaatattatgt-aactttttc 28361386  T
Q  130 aatttctgatgtgagaatgaatatgtcaatttcaggaattattcaaaaattgtcttgcaaatgatgattatgtcaattt 208  Q
    |||||  ||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||  |||| |||||||||||    
T  28361387 aattttagatgtgagaatgaatatgtaaattttaggaattaatcaaacattgtcttgcaaagaatgaatatgtcaattt 28361465  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 383 - 490
Target Start/End: Complemental strand, 14945549 - 14945445
Alignment:
Q  383 ttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagt 482  Q
    |||||| |||||||||||||| | |||||||||||||  |||||||||| ||| ||| | ||||||||||||||||||| ||||||| ||||||||||||    
T  14945549 ttatagatttaaggatttattgt-actttagttgtataggtggttgtaaggtt-aac-cgtgtaaaatattcaaattgaagagtatcgatgaaatgaagt 14945453  T
Q  483 tactttgt 490  Q
    ||||||||    
T  14945452 tactttgt 14945445  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 363 - 449
Target Start/End: Original strand, 49250029 - 49250114
Alignment:
Q  363 ttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaa 449  Q
    |||| ||||| |||||||||| |||||||||| |||||||| | ||||||||||||| ||||||||||||||||| |||||||||||    
T  49250029 ttgtttaagggattcatcattaataggtttaatgatttattgt-actttagttgtattagtggttgtaaagttgaccacatgtaaaa 49250114  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 383 - 490
Target Start/End: Complemental strand, 14940307 - 14940203
Alignment:
Q  383 ttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagt 482  Q
    |||||| |||||||||||||| | || ||||||||||  |||||||||| ||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||    
T  14940307 ttatagatttaaggatttattgt-acgttagttgtataggtggttgtaaggtt-aac-catgtaaaatattgaaattgaagagtatcgatgaaatgaagt 14940211  T
Q  483 tactttgt 490  Q
    ||||||||    
T  14940210 tactttgt 14940203  T

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Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 383 - 490
Target Start/End: Complemental strand, 14950314 - 14950210
Alignment:
Q  383 ttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagt 482  Q
    |||||| |||||||||||||| | || ||||||||||  |||||||||| ||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||    
T  14950314 ttatagatttaaggatttattgt-acgttagttgtataggtggttgtaaggtt-aac-catgtaaaatattgaaattgaagagtatcgatgaaatgaagt 14950218  T
Q  483 tactttgt 490  Q
    ||||||||    
T  14950217 tactttgt 14950210  T

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Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 383 - 490
Target Start/End: Complemental strand, 14954555 - 14954451
Alignment:
Q  383 ttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagt 482  Q
    |||||| |||||||||||||| | || ||||||||||  |||||||||| ||| ||| ||||||||||||| ||||||| ||||||| ||||||||||||    
T  14954555 ttatagatttaaggatttattgt-acgttagttgtataggtggttgtaaggtt-aac-catgtaaaatattgaaattgaagagtatcgatgaaatgaagt 14954459  T
Q  483 tactttgt 490  Q
    ||||||||    
T  14954458 tactttgt 14954451  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 490
Target Start/End: Complemental strand, 14941679 - 14941553
Alignment:
Q  363 ttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgag 462  Q
    |||||||| | ||||||||||||||| || ||||||||| || ||||||||||||||  |||||||||||| | ||| |||||||||||||||||||||     
T  14941679 ttgtataatggattcatcatttatagattcaaggattta-ttgtactttagttgtataggtggttgtaaag-tcaac-catgtaaaatattcaaattgaa 14941583  T
Q  463 gag-tatcaatg-aaatgaagttactttgt 490  Q
    ||| |||  ||| |||||||||||||||||    
T  14941582 gagttatagatgaaaatgaagttactttgt 14941553  T

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Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 490
Target Start/End: Complemental strand, 14951686 - 14951560
Alignment:
Q  363 ttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgag 462  Q
    |||||||| | ||||||||||||||| || ||||||||| || ||||||||||||||  |||||||||||| | ||| |||||||||||||||||||||     
T  14951686 ttgtataatggattcatcatttatagattcaaggattta-ttgtactttagttgtataggtggttgtaaag-tcaac-catgtaaaatattcaaattgaa 14951590  T
Q  463 gag-tatcaatg-aaatgaagttactttgt 490  Q
    ||| |||  ||| |||||||||||||||||    
T  14951589 gagttatagatgaaaatgaagttactttgt 14951560  T

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Target: chr1; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 363 - 490
Target Start/End: Complemental strand, 14955927 - 14955801
Alignment:
Q  363 ttgtataaggaattcatcatttataggtttaaggatttatttttactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgag 462  Q
    |||||||| | ||||||||||||||| || ||||||||| || ||||||||||||||  |||||||||||| | ||| |||||||||||||||||||||     
T  14955927 ttgtataatggattcatcatttatagattcaaggattta-ttgtactttagttgtataggtggttgtaaag-tcaac-catgtaaaatattcaaattgaa 14955831  T
Q  463 gag-tatcaatg-aaatgaagttactttgt 490  Q
    ||| |||  ||| |||||||||||||||||    
T  14955830 gagttatagatgaaaatgaagttactttgt 14955801  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 8791002 - 8791088
Alignment:
Q  406 tactttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaatgaaatgaagttactttgtta 492  Q
    |||||||||| |||  |||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||| |||||||||||    
T  8791002 tactttagttttatcggtggttgtaaagtttaccacatataaaatattcaaattgaggagtatcaatcaaatgaaattactttgtta 8791088  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 472
Target Start/End: Original strand, 6205758 - 6205819
Alignment:
Q  409 tttagttgtatgagtggttgtaaagttgaacacatgtaaaatattcaaattgaggagtatcaat 472  Q
    ||||||||||  ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||    
T  6205758 tttagttgta--agtggttgtaaagttgaccacatgtaaaacattcaaattgaagagtaccaat 6205819  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 106
Target Start/End: Complemental strand, 35182701 - 35182626
Alignment:
Q  31 atgtaatgtaaggttgatttgaactatgaaattctgcaatttagatttaaactatatgtatagacaattatgagtt 106  Q
    ||||||||| |  |||||||||| ||||||  |||||||||||||||| |||| |||||| |||||||| ||||||    
T  35182701 atgtaatgtcattttgatttgaagtatgaacctctgcaatttagatttgaactttatgtaaagacaattctgagtt 35182626  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 32725757 - 32725835
Alignment:
Q  246 ctttaaaatgtgaagtgaagggaaactcta-aaatttgaagctgcagaatgtgtatttgatatgtaaaaaactagtggatc 325  Q
    ||||||||||||||||||||||||||  || ||| | ||||||||||| ||||||  | ||||||||| ||||| ||||||    
T  32725757 ctttaaaatgtgaagtgaagggaaaccttacaaaatggaagctgcagagtgtgta--tcatatgtaaagaactattggatc 32725835  T

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