View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15691_low_3 (Length: 496)
Name: NF15691_low_3
Description: NF15691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15691_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 34780192 - 34780670
Alignment:
| Q |
1 |
ctcaaatgattagtctctaactttcgactaaaaaccttgagcaaccaaaagtnnnnnnngaaagtatgatcttctattttcttagttgatgatatataca |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
34780192 |
ctcaaatgattagtctctagctttcgactaaaaaccttgagcaaccaaaagtaaaaaaagtaagtatgatcttctattttcttagttgatgatatataca |
34780291 |
T |
|
| Q |
101 |
agattgacagagaattttgtggggatgttctgaaaagatagaagaatcaatgtcaaaatcagtacttagcaaaagtctagagcagaagccagaagcacat |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780292 |
agattgacaaagaattttgtggggatgttctgaaaagatagaagaatcaatgtcaaaatcagtacttagcaaaagtctagagcagaagccagaagcacat |
34780391 |
T |
|
| Q |
201 |
gtcgaccacacgccatggtatagaattaggacttttatgctacgtgtcattttcatgtatggtgggagccattatccactaagtatcaagtatccacact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780392 |
gtcgaccacacgccatggtatagaattaggacttttatgctacgtgtcattttcatgtatggtgggagccattatccactaagtatcaagtatccacact |
34780491 |
T |
|
| Q |
301 |
acgtagccagtgatcatatcattcacaaatttacaccatcaacaaaatatgcgaatcacacagctagccacaaataattgcattgatgccaataggaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780492 |
acgtagccagtgatcatatcattcacaaatttacaccatcaacaaaatatgcgaatcacacagctagccacaaataattgcattgatgccaataggaaaa |
34780591 |
T |
|
| Q |
401 |
acaaattaaaccttcacttcttattgttcttgaatttagacaccgaatttgtgcatgatgtgatgtatgtggtaaactt |
479 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780592 |
acaaattaaaccttcacttcttattgttcttgaatttagacaccgaatttgtgcatgatgtgatgtatgtggtaaactt |
34780670 |
T |
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