View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15691_low_6 (Length: 345)
Name: NF15691_low_6
Description: NF15691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15691_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 343
Target Start/End: Original strand, 8643191 - 8643527
Alignment:
| Q |
8 |
gagatgaagtaaaagagatataggtgattaggaacttaaatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagt |
107 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8643191 |
gagatgaagtaaaagagatatcggtgattaggaactaaaatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagt |
8643290 |
T |
|
| Q |
108 |
caatatagtaaaaccatagatgataactactgaacatcttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttc |
207 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8643291 |
caatatagtaaaaccatagatgataattactgaacatctgaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcattttttttc |
8643390 |
T |
|
| Q |
208 |
taaatatgataattgtgatttagcataacccttccttttgtatgaaaaatccttctttttagttatactc-ttcgtcaaaagcctctcacagaaggagga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
8643391 |
taaatatgataattgtgatttagcataacccttccttttgtatgaaaaatccttctttttagttgtactctttcatcaaaagcctctcacagaaggagga |
8643490 |
T |
|
| Q |
307 |
gggtacttgtcaagtcatcattcaagatcttcatttt |
343 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
8643491 |
gggtacttgtcaagtcatcattcaagatcttcatttt |
8643527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 46 - 345
Target Start/End: Original strand, 8635802 - 8636111
Alignment:
| Q |
46 |
aatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaaccatagatgataactactgaacatc |
145 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8635802 |
aatgaaatagttgagcaacaatcattgtctttttctaaaccattgccaacaagataacaagtcaatctagtaaaaccatagatgataactactgaacatc |
8635901 |
T |
|
| Q |
146 |
ttaattaaagtttac-aaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttct---aaatatgataattgtgatttagcataacccttc |
241 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||| ||||| |
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| T |
8635902 |
ttaattaaagtttacaaaaaaagacatcatttgcatcctaaaatgagatatgcattttttttctttcaaatatcataattgtgatttagcataaaccttc |
8636001 |
T |
|
| Q |
242 |
cttttgtatgaaaaatccttctttttagttata-----ctcttcgtcaaaagcc-tctcacagaaggaggagggtacttgtcaagtcatcattcaagatc |
335 |
Q |
| |
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|| |||||||||| ||||| ||||||||| || |||||| ||||||||| | || |||||||||| | ||||| ||| || |||||||||||| |
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| T |
8636002 |
ctgctgtatgaaaattccttgtttttagttgtactcttctcttcatcaaaagccttgtcctcgaaggaggagagcacttgccaaatcgtcattcaagatc |
8636101 |
T |
|
| Q |
336 |
ttcattttct |
345 |
Q |
| |
|
|||||||||| |
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|
| T |
8636102 |
ttcattttct |
8636111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 46 - 194
Target Start/End: Original strand, 8677197 - 8677344
Alignment:
| Q |
46 |
aatgaaatagtttagcaataatcattgtctttttctaaaccattgccaacaagataacaagtcaatatagtaaaaccatagatgataactactgaacatc |
145 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||| || |||||||||||||||||||||| | | |||||||||||||||||||||||| || |
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| T |
8677197 |
aatgaaatagttgagcaataatcattgtctttttccaaacaat-gccaacaagataacaagtcaatccaatgcaaccatagatgataactactgaacgtc |
8677295 |
T |
|
| Q |
146 |
ttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagata |
194 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8677296 |
ttaattaaagtttacaaaaaagacatcatttgcatccgaaaatgagata |
8677344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 8545409 - 8545351
Alignment:
| Q |
149 |
attaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||| |
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|
| T |
8545409 |
attaaagtttacaaaaaagacatcatttgcatcctaaaatgagatttgtattttttttc |
8545351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 233
Target Start/End: Original strand, 8640227 - 8640317
Alignment:
| Q |
139 |
gaacatcttaattaaagtttacaaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttctaaatatgataattgtgatttagcat |
233 |
Q |
| |
|
|||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||| |
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| T |
8640227 |
gaacatctgaattaaagcttacaaaaa-gacattgtttgcatcctaaaatgagatatgcat---tttttgaaatatcataattctgatttagcat |
8640317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 345
Target Start/End: Original strand, 8420392 - 8420437
Alignment:
| Q |
300 |
aggaggagggtacttgtcaagtcatcattcaagatcttcattttct |
345 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| ||||||| |
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|
| T |
8420392 |
aggaggaggatacttgtcaagtcatcattcaagatctttattttct |
8420437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 8549230 - 8549193
Alignment:
| Q |
159 |
acaaaaaagacatcatttgcatcctaaaatgagatatg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
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|
| T |
8549230 |
acaaaaaagacatcatttgcatcctaaaaagagatatg |
8549193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 8527663 - 8527719
Alignment:
| Q |
138 |
tgaacatcttaattaaagtttacaaaa-aagacatcatttgcatcctaaaatgagat |
193 |
Q |
| |
|
||||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
8527663 |
tgaacatctagattaaattttacaaaaaaagacatcatttgcatcttaaaatgagat |
8527719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 9075576 - 9075532
Alignment:
| Q |
149 |
attaaagtttacaaaaaagacatcatttgcatcctaaaatgagat |
193 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||| ||||| |
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|
| T |
9075576 |
attaaagttaacaaaaaagccatcatttgcatcctaaaacgagat |
9075532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 184
Target Start/End: Complemental strand, 1601392 - 1601347
Alignment:
| Q |
138 |
tgaacatcttaattaaagtttacaaaaaagacatcatttgcatccta |
184 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1601392 |
tgaacatctagattaaagtttacaaaaa-gacatcatttgcatccta |
1601347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 9002262 - 9002304
Alignment:
| Q |
303 |
aggagggtacttgtcaagtcatcattcaagatcttcattttct |
345 |
Q |
| |
|
||||||||| | |||||||| |||||||||||||||||||||| |
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|
| T |
9002262 |
aggagggtaatagtcaagtcgtcattcaagatcttcattttct |
9002304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 44438811 - 44438654
Alignment:
| Q |
63 |
ataatcattgtctttttctaaaccattgccaacaagataac-aagtcaatatagtaaaaccatagatgataactactgaacatcttaattaaa-gtttac |
160 |
Q |
| |
|
|||||||||| |||||||||||||| | ||| ||||||||| ||| || | | |||||||||| ||| || || ||||||| || |||||| ||||| |
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|
| T |
44438811 |
ataatcattgactttttctaaaccaat-ccatcaagataaccaagccagtctcgtaaaaccatggataatgaccgatgaacattttgattaaaagtttag |
44438713 |
T |
|
| Q |
161 |
aaaaaagacatcatttgcatcctaaaatgagatatgcatttcttttctaaatatgataa |
219 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||| |||| ||||||| |||| |
|
|
| T |
44438712 |
aaaaaagacatcatttgcctcctaaaatgagatgtgtattttttttttaaatatcataa |
44438654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 218 - 342
Target Start/End: Original strand, 35777264 - 35777390
Alignment:
| Q |
218 |
aattgtgatttagcataacccttccttttgtatgaaaaatccttctttttagttatactcttcgtcaaaagcctctc-acagaaggag-gagggtacttg |
315 |
Q |
| |
|
||||||||||||||||| || | ||| |||||| ||| | |||| | ||||| ||||||||| ||||||| || | || ||||||| |||| |||||| |
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| T |
35777264 |
aattgtgatttagcatagccatgcctactgtatggaaattacttcataatagttgtactcttcgccaaaagcgtcaccaccgaaggagagaggatacttg |
35777363 |
T |
|
| Q |
316 |
tcaagtcatcattcaagatcttcattt |
342 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
35777364 |
tcaagtcatcattcaagatcttcattt |
35777390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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