View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15691_low_7 (Length: 337)
Name: NF15691_low_7
Description: NF15691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15691_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 10799125 - 10799443
Alignment:
| Q |
7 |
ccttagtctccccttcctccatccattatggtgacgatgaaatggcagcatcgatgattcccttgatgtcgatgcaaataaagagacataatcaatgatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
10799125 |
ccttagtctccccttcctccatccattatggtgacgatgaaatggcagaatcgatgattcctttgatgtcgatgcaaataaagagatataatcaacgatt |
10799224 |
T |
|
| Q |
107 |
gtatgtcgaaagtagttaagaacaaagatgacaaaaatgacgtcactgagagtttagaagaagatgaattggatcagggtattttgaa-ttttttgaagg |
205 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
10799225 |
gtatgtcgaaagtagttaagaacggaaatgacaaaaatgacgtcactgagagtttagaagaagatgaattggatttgggtattttgaatttttttgaagg |
10799324 |
T |
|
| Q |
206 |
tgatggagaagacgacgtgtttggaggttgataaggcgaagtgtgtgtcttatgggagaaattgcgattgggcgatgagagaagaattttcgagtgagat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10799325 |
tgatggagaagacgacgtgtttggaggttgataatgcgaagtgtgtgtcttatgggagaaattgcgattgggcgatgagagaagaatttttgagtgagat |
10799424 |
T |
|
| Q |
306 |
tcgagaaaaaagattaatc |
324 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
10799425 |
tcgagaaagaagattaatc |
10799443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 7 - 326
Target Start/End: Original strand, 10808288 - 10808606
Alignment:
| Q |
7 |
ccttagtctccccttcctccatccattatggtgacgatgaaatggcagcatcgatgattcccttgatgtcgatgcaaataaagagacataatcaatgatt |
106 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| | | ||||||||||| ||| |||||||||||| |||| |
|
|
| T |
10808288 |
ccttggtctccccttccttcatccattatggtgacgatgaaatggcagaatcgatgattcccctaacgtcgatgcaaagaaaaagacataatcaacgatt |
10808387 |
T |
|
| Q |
107 |
gtatgtcgaaagtagttaagaacaaagatgacaaaaatgacgtcactgagagtttagaagaagatgaattggatcagggtattttgaattttttgaaggt |
206 |
Q |
| |
|
||||||| ||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
10808388 |
gtatgtcaaaagtagttaagagcagagatgacaaaaatgacgacactgagagtttagaagaagatgaattggatctgggta-tttgaattttttgaaggt |
10808486 |
T |
|
| Q |
207 |
gatggagaagacgacgtgtttggaggttgataaggcgaagtgtgtgtcttatgggagaaattgcgattgggcgatgagagaagaattttcgagtgagatt |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||| | |||||||||| ||||||||| || ||||||||| |
|
|
| T |
10808487 |
gatggagaagacgatgtgtttggaggttgataatgcaaagtgtgtgtcttatgggagaaattgtgcttgggcgatgggagaagaataatctagtgagatt |
10808586 |
T |
|
| Q |
307 |
cgagaaaaaagattaatcta |
326 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
10808587 |
cgagaaagaagattaatcta |
10808606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University